RetrogeneDB ID: | retro_mmul_1031 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:63933699..63934403(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4980 | ||
Ensembl ID: | ENSMMUG00000012989 | ||
Aliases: | HNRNPA1, HNRPA1, hnRNP A1 | ||
Description: | None |
Percent Identity: | 78.66 % |
Parental protein coverage: | 83.22 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA |
QSPKEPEQ...LF.G.LSF..TDE.LRS..EQWGTLT.CVVMRDPNTK.SR.FGFVTYATVEEVDAAMN. | |
Retrocopy | QSPKEPEQ---LFTGVLSFHMTDERLRSPSEQWGTLTGCVVMRDPNTKSSRDFGFVTYATVEEVDAAMNT |
Parental | RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK |
RPHKVDGR.VEPKRAVSRE.SQRPGAHLTVKK.FV.GI.E..EEHHLRDYFEQYGKIEVIE..TD.GSGK | |
Retrocopy | RPHKVDGRAVEPKRAVSREGSQRPGAHLTVKKVFVAGIEEYIEEHHLRDYFEQYGKIEVIEVVTD*GSGK |
Parental | KRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGND |
KR.FAF.TFDDHDSVDKIVIQKYH.VNGHNCEVRKAL.KQE..SAS..QRG..GSGNFGGG.GGGF.GND | |
Retrocopy | KRSFAFITFDDHDSVDKIVIQKYHCVNGHNCEVRKALLKQEVDSASPNQRG*RGSGNFGGGCGGGFSGND |
Parental | NFGRGGNFSG-RGGFGGSRGGGGYGGSGD |
NF..GGNF....G..G....G.GY.G.GD | |
Retrocopy | NFDCGGNFNA<CGHGGYGGSGDGYNGFGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 72 .61 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 144 .14 RPM |
SRP007412_cerebellum | 0 .06 RPM | 88 .27 RPM |
SRP007412_heart | 0 .00 RPM | 141 .68 RPM |
SRP007412_kidney | 0 .12 RPM | 70 .66 RPM |
SRP007412_liver | 0 .16 RPM | 68 .12 RPM |
SRP007412_testis | 0 .00 RPM | 87 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006580 | 16 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000009228 | 7 retrocopies | |
Macaca mulatta | ENSMMUG00000001858 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000012989 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000004620 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005735 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013350 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029707 | 3 retrocopies | |
Oreochromis niloticus | ENSONIG00000012248 | 1 retrocopy |