RetrogeneDB ID: | retro_mmul_187 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:54484537..54485365(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000011937 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4980 | ||
Ensembl ID: | ENSMMUG00000012989 | ||
Aliases: | HNRNPA1, HNRPA1, hnRNP A1 | ||
Description: | None |
Percent Identity: | 67.04 % |
Parental protein coverage: | 70.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT |
VVEPKRAVSREDS..PGAHLTVKKIFVGGIKEDTEE..LRDYFE.YGKIE.IE.M.DR.SGKKRGFAFVT | |
Retrocopy | VVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT |
Parental | FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGF-GGNDNFGRGGN |
FDDHD.VDKIV.QKYHT.NGHNCEV.KALSKQEM.SA.S......GSGNF..GRGG.F.GG..NFGRGGN | |
Retrocopy | FDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGN |
Parental | FSGRGGFGGSRGG--GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGS-GSYD |
..GRGG.GG..GG..G.YGG...GYNGFG.DGG..GGGPGYS....GYG.GG.GYGNQG.GYGGS.G.YD | |
Retrocopy | LGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRG-GYGGGGPGYGNQGGGYGGSGGGYD |
Parental | SYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGG |
.YN.GG..G...G.G.N....G.Y......N......G...G...G....G.YG.GG | |
Retrocopy | GYNEGGNFGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 14 .12 RPM | 72 .61 RPM |
SRP007412_brain_prefrontal_cortex | 15 .87 RPM | 144 .14 RPM |
SRP007412_cerebellum | 16 .79 RPM | 88 .27 RPM |
SRP007412_heart | 24 .26 RPM | 141 .68 RPM |
SRP007412_kidney | 14 .79 RPM | 70 .66 RPM |
SRP007412_liver | 18 .68 RPM | 68 .12 RPM |
SRP007412_testis | 77 .65 RPM | 87 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006580 | 16 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000009228 | 7 retrocopies | |
Macaca mulatta | ENSMMUG00000001858 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000012989 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000004620 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005735 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013350 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029707 | 3 retrocopies | |
Oreochromis niloticus | ENSONIG00000012248 | 1 retrocopy |