RetrogeneDB ID: | retro_mmul_1786 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:110526820..110527300(+) | ||
Located in intron of: | ENSMMUG00000019048 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.872 | ||
Ensembl ID: | ENSMMUG00000022575 | ||
Aliases: | None | ||
Description: | M-phase phosphoprotein 6 [Source:RefSeq peptide;Acc:NP_001180532] |
Percent Identity: | 96.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAERKTKLSKNLLRMKFMQRGLDSETKKQLEEEEKKIISEEHWYLDLPELKEKESFIIEEQSFLLCEDL |
M.AERKTKLSKNLLR.KFMQRGLDSETKKQLEEEEKKIISE.HWYLDLPELKEKESFIIEEQSFLLCED. | |
Retrocopy | MVAERKTKLSKNLLRVKFMQRGLDSETKKQLEEEEKKIISEDHWYLDLPELKEKESFIIEEQSFLLCEDP |
Parental | LYGRMSFRGFNPEVEKLMLQMNAKHKAEEVEDETVELDVSDEEMARRYETLVGTIGKKFARKRDHANYEE |
LYGRMSFRGFNP.VEKLMLQMNAKHKAEEVEDETVELDVSDEEMARRYETLVGTIGKKFARKRDHANYEE | |
Retrocopy | LYGRMSFRGFNPDVEKLMLQMNAKHKAEEVEDETVELDVSDEEMARRYETLVGTIGKKFARKRDHANYEE |
Parental | DENGDIKPIKAKKMFLKPQD |
DENGDIKPIKAKKMFLKPQD | |
Retrocopy | DENGDIKPIKAKKMFLKPQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 8 .52 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .27 RPM |
SRP007412_cerebellum | 0 .26 RPM | 7 .75 RPM |
SRP007412_heart | 0 .00 RPM | 5 .36 RPM |
SRP007412_kidney | 0 .12 RPM | 4 .81 RPM |
SRP007412_liver | 0 .00 RPM | 1 .39 RPM |
SRP007412_testis | 0 .04 RPM | 3 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000127 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000016498 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000011060 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000010276 | 6 retrocopies | |
Homo sapiens | ENSG00000135698 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001405 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000580 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000268 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022575 | 2 retrocopies |
retro_mmul_1786 , retro_mmul_471,
|
Mus musculus | ENSMUSG00000031843 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010725 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024341 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000012532 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000007592 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008398 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050087 | 6 retrocopies | |
Tupaia belangeri | ENSTBEG00000013110 | 8 retrocopies | |
Tarsius syrichta | ENSTSYG00000001928 | 2 retrocopies |