RetrogeneDB ID: | retro_tsyr_906 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_236258:2185..2645(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MPHOSPH6 | ||
Ensembl ID: | ENSTSYG00000001928 | ||
Aliases: | None | ||
Description: | M-phase phosphoprotein 6 [Source:HGNC Symbol;Acc:7214] |
Percent Identity: | 78.98 % |
Parental protein coverage: | 96.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAAERKTKLSKNLLRMKFMQRGLDSETK-KQLEEEEKKIISEEHWYLDLPELKEKESFIIE-EQSFLLCE |
MAA..KTKLSK.LL..KFMQRGLDSETK..Q.EEEEKK.ISEEHWYL.LPELKEK.SF.I...Q.FLLCE | |
Retrocopy | MAAKYKTKLSKSLLHVKFMQRGLDSETK<EQREEEEKKTISEEHWYLGLPELKEK*SFVIK<KQNFLLCE |
Parental | DLLYGRMSFRGFNPEVEKLMLQMNSKNKKEEVKDEAVELDVSDEEMARRYETLVGTIGKKFARKRDHANY |
DLL..RM.FRGFN..VEKLMLQMN.KNK.E..KDEAVELDVS.EEMARRYETLVGTIGKKF.RKRD.ANY | |
Retrocopy | DLLHRRMAFRGFNYGVEKLMLQMNAKNKTEVIKDEAVELDVSVEEMARRYETLVGTIGKKFDRKRDYANY |
Parental | EEDENGDIKPSKAKKMF |
..DENGDIKPSK.K..F | |
Retrocopy | -QDENGDIKPSKGKMFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000127 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000016498 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000011060 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000010276 | 6 retrocopies | |
Homo sapiens | ENSG00000135698 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001405 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000580 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000268 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022575 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031843 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010725 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024341 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000012532 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000007592 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008398 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050087 | 6 retrocopies | |
Tupaia belangeri | ENSTBEG00000013110 | 8 retrocopies | |
Tarsius syrichta | ENSTSYG00000001928 | 2 retrocopies |
retro_tsyr_1511, retro_tsyr_906 ,
|