RetrogeneDB ID: | retro_rnor_2391 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:112090199..112090679(-) | ||
Located in intron of: | ENSRNOG00000000345 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mphosph6 | ||
Ensembl ID: | ENSRNOG00000050087 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MASERKTKLSKNLLRMKFMQRGLDSETKKQLEEEERKMISDEHWYLDLPELKEKESFIIEEQSFSLCEDL |
M.SE.KTKLS.NLLRMKFMQRGLDSE..KQLEEEE.K.I.DEHWYLDLPELKEKESFIIEEQSFSLCEDL | |
Retrocopy | MTSEQKTKLSTNLLRMKFMQRGLDSENQKQLEEEEWKTIRDEHWYLDLPELKEKESFIIEEQSFSLCEDL |
Parental | LYGRMSFRGFNPEVEKLMLQMNSKNRAEAAEEEETVEVDVSDEEMARRYETLVGTIGKKFAKKRDRANYE |
.YGRM.FRGFNPEVEK..LQ.NS.NR..AAEEEETVE.DVS.EEMARRYETL.GTIGK.FAK.RD.AN.E | |
Retrocopy | FYGRMPFRGFNPEVEKFVLQINSRNRVAAAEEEETVEADVSEEEMARRYETLEGTIGKMFAKNRD*ANDE |
Parental | EDENGNIKAIKTKKMFLKPQD |
EDENGNIKA.K..KMFLKP.D | |
Retrocopy | EDENGNIKAMKI-KMFLKPED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .25 RPM |
SRP017611_kidney | 0 .14 RPM | 9 .14 RPM |
SRP017611_liver | 0 .00 RPM | 4 .98 RPM |