RetrogeneDB ID: | retro_mmus_3662 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:94422860..94423295(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000084007 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mphosph6 | ||
Ensembl ID: | ENSMUSG00000031843 | ||
Aliases: | Mphosph6, 1110001M01Rik, AA536809, C86426 | ||
Description: | M phase phosphoprotein 6 [Source:MGI Symbol;Acc:MGI:1915783] |
Percent Identity: | 80. % |
Parental protein coverage: | 89.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MASERKTKLSKNLLRMKFMQRGLDSETKKQLEEEERKMISDEHWYLDLPELKEKESFIVEEQSFSLCEDL |
M..E.KTKLSKNLL.MKFMQRGLDS.TKKQLE.EERKMI.D.HWYLDL.E.KEKES....EQSFSLCEDL | |
Retrocopy | MSLEHKTKLSKNLLCMKFMQRGLDSGTKKQLEKEERKMIRDKHWYLDLLEWKEKESVTIDEQSFSLCEDL |
Parental | LYGRMSFRGFNPEVEKLMLQMNSKNRAEAAEEDETVEVDVSDEEMARRYETLVGTI-GKKFVKKRDRANY |
LYGRMSFRGFNPEVE.LML.MNSKN.A.AAEEDE.VEVD.S.EEMARRY.TLVGTI....F.KKRD.ANY | |
Retrocopy | LYGRMSFRGFNPEVETLMLPMNSKN*AAAAEEDEMVEVDGSNEEMARRYVTLVGTIXXXXFAKKRD*ANY |
Parental | EEDEN |
.EDEN | |
Retrocopy | KEDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .21 RPM | 6 .78 RPM |
SRP007412_cerebellum | 0 .52 RPM | 8 .64 RPM |
SRP007412_heart | 0 .03 RPM | 3 .80 RPM |
SRP007412_kidney | 0 .15 RPM | 6 .39 RPM |
SRP007412_liver | 0 .00 RPM | 2 .21 RPM |
SRP007412_testis | 0 .00 RPM | 8 .28 RPM |