RetrogeneDB ID: | retro_mmul_2325 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:26402240..26402946(-) | ||
Located in intron of: | ENSMMUG00000008028 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMP12 | ||
Ensembl ID: | ENSMMUG00000004250 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.34 % |
Parental protein coverage: | 50.85 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | GHSLGLGHSSDPKAIM-FPTYKYVDINTFHLSADDIRGIQSLYGGPKEHQPMPQPDDLEPALCDPNLSFD |
GHSLGLGHS.DPKAI..F..Y.YVD...F.LS.DDI..IQ.L.G.P..HQP...P..L.PA.CD..LSFD | |
Retrocopy | GHSLGLGHSKDPKAIF<FSLYSYVDPTRFCLSTDDIYDIQFLCGSP*KHQPLSHPYTLKPATCDSKLSFD |
Parental | AVTTVGDKIFFFKDRFFLLKLSERPGTSVDLISSLWPTLPSGIEAAYEIKARNQVFLFKDD-KYWLISNL |
AVTT...KIFFFKDRFF..KL.E....SV.LISSL...L.SGI.AAY.I..R.Q..LFKD..KY.LIS.L | |
Retrocopy | AVTTIEGKIFFFKDRFFWWKLPELSKSSVSLISSLRLILSSGIQAAYKIGSRSQILLFKDE<KYSLISRL |
Parental | RPQSDYPKSIHSFGFPDFVKKIDAAVFNPHFYRTYFFVDNQYWRYDERRQMMDPGYPKLITKNFRGIGPK |
.P..D..K.I.S..FP..VK..D.A.FN...Y.TYFFV..QYWR.DE.R..M.P.YP.L.TK.F.GI.P. | |
Retrocopy | KP--DDHKRIYSLSFPVSVKRRDGAIFNSLNYKTYFFVHKQYWR*DEKRPFMNPDYPVLVTKKFLGIRPQ |
Parental | IDAVFYSKNKYYYFFQGSNQFEYDFLLQRIT |
IDAVFYSK..YY..F.G.NQ.EYD.L....T | |
Retrocopy | IDAVFYSK-EYYCVF*GCNQVEYDILTNCVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .04 RPM | 0 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008413 | 6 retrocopies | |
Equus caballus | ENSECAG00000019445 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000010062 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004250 | 1 retrocopy |
retro_mmul_2325 ,
|
Otolemur garnettii | ENSOGAG00000010221 | 1 retrocopy |