RetrogeneDB ID: | retro_ogar_965 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873532.1:756005..756786(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000010221 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.19 % |
Parental protein coverage: | 55.34 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 6 |
Parental | AHAFGPAPGLGGDAHFDEDEFWTKNYRGTNLFLVAVHEFGHSLGLGHSND-KNAIMFPTYSYVDPNRFRL |
AH.FGP..G.G.DAH.D..E..TKN.RGT.LFL.AVHE.GHSLGL.HSN......MFPT..Y.D.N.F.L | |
Retrocopy | AHTFGPGSGIG-DAHCDKAEI*TKNSRGTDLFLPAVHELGHSLGLSHSNE<MKDLMFPTCDYSDLNAFHL |
Parental | SDDDIRGIQSL-YGGPE-RQPMPNPDRPKSDMCDPDLSFDAVTTVGDKIFFFKDKFFWWKVPERPETSTS |
S.DDI...QSL..G.PE..QP.P.PD.PK...CDP.LSFDAVT.V.DK..FFKD.FF....P.RPET..S | |
Retrocopy | SADDIHVFQSL<IGRPEDHQPTPDPDSPKPVICDPNLSFDAVTIVRDKAIFFKDRFFR*EAPKRPETGDS |
Parental | LLSSLWPTLPSGIQAAYEIAARN-QVFLF-KDDKYWLISYLRPQPNYPKSIHSL-GFPD-SVKKIDAAVF |
L.S..WPT.PSGIQAA.EI.ARN...F.F.K.DKYWLIS.LR.QPNYPKSI.SL.GFP....K..D..VF | |
Retrocopy | LISPAWPTCPSGIQAAHEIEARN>KLFIF>KNDKYWLISNLRSQPNYPKSIRSL<GFP*<TLKNTDTVVF |
Parental | NPLHHKTYFFVDDQYWRYDERRQFMDPGYPRLITKYFPGIGPK--VDAVFYSENRYYY |
NPL.H.TYFF.DD.Y.R.DERRQ.M..GYP..ITK.FPG..PK...D..F...N...Y | |
Retrocopy | NPLFHTTYFFADD*Y*RSDERRQCMESGYPKPITKHFPGTRPKNRCDCFFQGSNQFEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008413 | 6 retrocopies | |
Equus caballus | ENSECAG00000019445 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000010062 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004250 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010221 | 1 retrocopy |
retro_ogar_965 ,
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