RetrogeneDB ID: | retro_mmul_311 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:71655924..71656272(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000032421 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1655 | ||
Ensembl ID: | ENSMMUG00000020627 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P2 [Source:RefSeq peptide;Acc:NP_001180505] |
Percent Identity: | 98.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGA |
MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRL.KVISELNGKNIEDVIAQGIGKLASVPAGGA | |
Retrocopy | MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLDKVISELNGKNIEDVIAQGIGKLASVPAGGA |
Parental | VAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD |
VAVSAAPGSAAPAA.SAPAAAEEKKDEKKEESEESDDDMGFGLFD | |
Retrocopy | VAVSAAPGSAAPAASSAPAAAEEKKDEKKEESEESDDDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .82 RPM |
SRP007412_brain_prefrontal_cortex | 0 .32 RPM | 41 .49 RPM |
SRP007412_cerebellum | 0 .06 RPM | 5 .10 RPM |
SRP007412_heart | 0 .00 RPM | 9 .60 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .22 RPM |
SRP007412_liver | 0 .08 RPM | 119 .54 RPM |
SRP007412_testis | 0 .45 RPM | 5 .20 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006935 | 1 retrocopy | |
Bos taurus | ENSBTAG00000001777 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000009523 | 1 retrocopy | |
Ciona intestinalis | ENSCING00000000626 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011838 | 6 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011513 | 12 retrocopies | |
Dipodomys ordii | ENSDORG00000016458 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010240 | 4 retrocopies | |
Felis catus | ENSFCAG00000008417 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020627 | 2 retrocopies |
retro_mmul_221, retro_mmul_311 ,
|
Mustela putorius furo | ENSMPUG00000009049 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025508 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016296 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000009576 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002116 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001056 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012842 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012450 | 1 retrocopy |