RetrogeneDB ID:

retro_mmul_311

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:X:71655924..71656272(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000032421
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.1655
Ensembl ID:ENSMMUG00000020627
Aliases:None
Description:60S acidic ribosomal protein P2 [Source:RefSeq peptide;Acc:NP_001180505]


Retrocopy-Parental alignment summary:






>retro_mmul_311
ATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTCGGGGGTAACTCCTCCCCCAGCGCCAAGGACATCAAGAAGATCTT
GGACAGTGTGGGCATCGAGGCGGACGACGACCGACTCGACAAGGTTATTAGTGAGCTGAATGGAAAAAACATTGAAGACG
TCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTGGCCGTCTCCGCTGCCCCAGGCTCTGCA
GCGCCTGCTGCTAGTTCCGCGCCTGCTGCAGCAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAGTCAGACGA
TGACATGGGATTTGGCCTCTTTGATTAA

ORF - retro_mmul_311 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.26 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGA
MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRL.KVISELNGKNIEDVIAQGIGKLASVPAGGA
RetrocopyMRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLDKVISELNGKNIEDVIAQGIGKLASVPAGGA
ParentalVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD
VAVSAAPGSAAPAA.SAPAAAEEKKDEKKEESEESDDDMGFGLFD
RetrocopyVAVSAAPGSAAPAASSAPAAAEEKKDEKKEESEESDDDMGFGLFD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 4 .82 RPM
SRP007412_brain_prefrontal_cortex 0 .32 RPM 41 .49 RPM
SRP007412_cerebellum 0 .06 RPM 5 .10 RPM
SRP007412_heart 0 .00 RPM 9 .60 RPM
SRP007412_kidney 0 .00 RPM 8 .22 RPM
SRP007412_liver 0 .08 RPM 119 .54 RPM
SRP007412_testis 0 .45 RPM 5 .20 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_311 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_311 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_311 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 18 parental genes, and 47 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000069351 retrocopy
Bos taurus ENSBTAG000000017772 retrocopies
Canis familiaris ENSCAFG000000095231 retrocopy
Ciona intestinalis ENSCING000000006261 retrocopy
Callithrix jacchus ENSCJAG000000118386 retrocopies
Dasypus novemcinctus ENSDNOG0000001151312 retrocopies
Dipodomys ordii ENSDORG000000164583 retrocopies
Echinops telfairi ENSETEG000000102404 retrocopies
Felis catus ENSFCAG000000084171 retrocopy
Macaca mulatta ENSMMUG00000020627 2 retrocopies
retro_mmul_221, retro_mmul_311 ,
Mustela putorius furoENSMPUG000000090491 retrocopy
Mus musculus ENSMUSG000000255084 retrocopies
Otolemur garnettii ENSOGAG000000162962 retrocopies
Petromyzon marinus ENSPMAG000000095761 retrocopy
Rattus norvegicus ENSRNOG000000021163 retrocopies
Sarcophilus harrisii ENSSHAG000000010561 retrocopy
Sus scrofa ENSSSCG000000128421 retrocopy
Tursiops truncatus ENSTTRG000000124501 retrocopy



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