RetrogeneDB ID: | retro_btau_1399 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:98729817..98730042(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP2 | ||
Ensembl ID: | ENSBTAG00000001777 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P2 [Source:UniProtKB/Swiss-Prot;Acc:P42899] |
Percent Identity: | 78.67 % |
Parental protein coverage: | 65.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKLASVPAGGA |
.RYVASYLLAA..GNSSPS.KD..KILDS..I..DDDRLNKVISEL..KN.EDVI..GIGKLASVPAGGA | |
Retrocopy | LRYVASYLLAARWGNSSPSSKDMGKILDSMCIQTDDDRLNKVISELNRKNTEDVIV*GIGKLASVPAGGA |
Parental | VAVSA |
.AVSA | |
Retrocopy | LAVSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 37 .20 RPM |
ERP005899_muscle | 0 .00 RPM | 574 .71 RPM |
SRP017611_brain | 0 .00 RPM | 60 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 140 .83 RPM |
SRP017611_liver | 0 .00 RPM | 158 .72 RPM |
SRP030211_testis | 0 .00 RPM | 128 .39 RPM |