RetrogeneDB ID: | retro_cfam_18 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 22:48675519..48675867(+) | ||
Located in intron of: | ENSCAFG00000005625 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000029967 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000009523 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRYVASYLLAALRGNTSPSAKDIKKIGDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGA |
MRYVASYLLA.L.GNTSPSAKD.KKI.DSVGI.ADDDRLNKVISELNGKNIEDV.AQGIGKLA.VPAGGA | |
Retrocopy | MRYVASYLLATLGGNTSPSAKDVKKIPDSVGIKADDDRLNKVISELNGKNIEDVMAQGIGKLAGVPAGGA |
Parental | VAVSAAPGSAAPAAGAAPAAAEEKKDEKKEESEESDDDMGFGLFD |
.AVSAAPGSAAPAAGAAPAA.EEKKDEKKEESEESDDDMGFGLFD | |
Retrocopy | AAVSAAPGSAAPAAGAAPAAVEEKKDEKKEESEESDDDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 6 .38 RPM | 245 .52 RPM |
SRP017611_brain | 1 .27 RPM | 45 .41 RPM |
SRP017611_kidney | 9 .91 RPM | 231 .72 RPM |
SRP017611_liver | 3 .99 RPM | 104 .27 RPM |