Parental gene:

RPLP2, ENSBTAG00000001777

Aliases:None
Description:60S acidic ribosomal protein P2 [Source:UniProtKB/Swiss-Prot;Acc:P42899]
Organism:Cow (Bos taurus)
Coordinates:29:50768653..50770791(-)


>ENSBTAG00000001777
ATGCGTTACGTTGCCTCCTACTTGTTGGCCGCCCTCGGGGGCAACTCCTCCCCCAGCGCCAAGGACATCAAAAAGATCCT
GGACAGCGTGGGCATCGAGGCAGACGACGATCGGCTCAACAAGGTCATCAGTGAGCTCCACGGAAAGAACATCGAGGACG
TCATTGCTCAGGGTATCGGCAAGCTGGCCAGTGTGCCGGCTGGTGGGGCTGTGGCCGTCTCCGCTGCCCCAGGATCGGCA
GCACCCGCTGCGGGTTCTGCTCCAGCCGCAGCAGAGGAGAAGAAGGAGGAGAAGAAGGAAGAGTCGGAGGAGTCAGATGA
TGACATGGGCTTCGGCTTGTTTGACTAG

Library Parental gene expression (RPM)
ERP005899_liver 37 .20 RPM
ERP005899_muscle 574 .71 RPM
SRP017611_brain 60 .98 RPM
SRP017611_kidney 140 .83 RPM
SRP017611_liver 158 .72 RPM
SRP030211_testis 128 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006935 possible_ortholog 1 retrogene
retro_amel_197,
Canis familiaris ENSCAFG00000009523 possible_ortholog 1 retrogene
retro_cfam_18,
Ciona intestinalis ENSCING00000000626 ortholog_one2many 1 retrogene
retro_cint_34,
Callithrix jacchus ENSCJAG00000011838 possible_ortholog 6 retrogenes
retro_cjac_2399, retro_cjac_2497, retro_cjac_2539, retro_cjac_2745, retro_cjac_3097, retro_cjac_3859,
Dasypus novemcinctus ENSDNOG00000011513 possible_ortholog 12 retrogenes
retro_dnov_143, retro_dnov_1464, retro_dnov_1498, retro_dnov_1522, retro_dnov_1655, retro_dnov_1693, retro_dnov_1768, retro_dnov_200, retro_dnov_2104, retro_dnov_2293, retro_dnov_335, retro_dnov_366,
Dipodomys ordii ENSDORG00000016458 possible_ortholog 3 retrogenes
retro_dord_705, retro_dord_706, retro_dord_707,
Echinops telfairi ENSETEG00000010240 possible_ortholog 4 retrogenes
retro_etel_1206, retro_etel_1458, retro_etel_1640, retro_etel_455,
Felis catus ENSFCAG00000008417 possible_ortholog 1 retrogene
retro_fcat_860,
Homo sapiens ENSG00000177600 possible_ortholog 5 retrogenes
retro_hsap_1777, retro_hsap_3395, retro_hsap_3440, retro_hsap_821, retro_hsap_982,
Gorilla gorilla ENSGGOG00000010789 possible_ortholog 5 retrogenes
retro_ggor_2238, retro_ggor_2298, retro_ggor_2323, retro_ggor_672, retro_ggor_784,
Macaca mulatta ENSMMUG00000020627 possible_ortholog 2 retrogenes
retro_mmul_221, retro_mmul_311,
Mustela putorius furo ENSMPUG00000009049 possible_ortholog 1 retrogene
retro_mputfur_254,
Mus musculus ENSMUSG00000025508 possible_ortholog 4 retrogenes
retro_mmus_1364, retro_mmus_2111, retro_mmus_2282, retro_mmus_330,
Nomascus leucogenys ENSNLEG00000026860 possible_ortholog 5 retrogenes
retro_nleu_1948, retro_nleu_2144, retro_nleu_2296, retro_nleu_2762, retro_nleu_85,
Otolemur garnettii ENSOGAG00000016296 possible_ortholog 2 retrogenes
retro_ogar_156, retro_ogar_275,
Petromyzon marinus ENSPMAG00000009576 possible_ortholog 1 retrogene
retro_pmar_15,
Pongo abelii ENSPPYG00000002885 possible_ortholog 6 retrogenes
retro_pabe_1537, retro_pabe_1543, retro_pabe_2789, retro_pabe_2844, retro_pabe_732, retro_pabe_830,
Pan troglodytes ENSPTRG00000003137 possible_ortholog 5 retrogenes
retro_ptro_1189, retro_ptro_2307, retro_ptro_2332, retro_ptro_572, retro_ptro_764,
Rattus norvegicus ENSRNOG00000002116 possible_ortholog 3 retrogenes
retro_rnor_257, retro_rnor_320, retro_rnor_388,
Sarcophilus harrisii ENSSHAG00000001056 ortholog_one2many 1 retrogene
retro_shar_321,
Sus scrofa ENSSSCG00000012842 possible_ortholog 1 retrogene
retro_sscr_54,
Tursiops truncatus ENSTTRG00000012450 ortholog_one2one 1 retrogene
retro_ttru_1420,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_117 90.43 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_btau_1399 78.67 65.22
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSBTAG00000001777 retrocopies