RetrogeneDB ID: | retro_mmul_612 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:64542837..64544066(+) | ||
Located in intron of: | ENSMMUG00000008152 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KLHL12 | ||
Ensembl ID: | ENSMMUG00000017849 | ||
Aliases: | None | ||
Description: | kelch-like protein 12 [Source:RefSeq peptide;Acc:NP_001253268] |
Percent Identity: | 85.89 % |
Parental protein coverage: | 72.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SQKHFPEVVQHEEFILLSQGEVEKLIKCDEIQVDSEEPVFEAVINWVKHAKKEREESLPNLLQYVRMPLL |
SQKHFPEVV.HEEFILLSQG.VEKLIKCDEIQVDSEEPVFEAVIN..KH.KK.RE..LPNLLQYVRMPLL | |
Retrocopy | SQKHFPEVV*HEEFILLSQGGVEKLIKCDEIQVDSEEPVFEAVINCLKHVKKQREKPLPNLLQYVRMPLL |
Parental | TPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRARLGANEVLLVVGGFGSQQSPID |
TPRYITDV.DAEPF.RCSLQCRDLVDEAKKFHLRPEL..QMQGPRTRA.LGANEVLLV.GGFGSQQSP.D | |
Retrocopy | TPRYITDVTDAEPFFRCSLQCRDLVDEAKKFHLRPELQCQMQGPRTRAHLGANEVLLVAGGFGSQQSPTD |
Parental | VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV |
VVEKYDPKTQEW.FLP.ITR.R.YVASVSLHDRIY.IGGYD..S.LSSVECLDY.ADEDGVWYSV.P.NV | |
Retrocopy | VVEKYDPKTQEWRFLPNITRNRHYVASVSLHDRIYIIGGYDSCSCLSSVECLDYIADEDGVWYSVTPINV |
Parental | RRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGL |
..GLAGATT.GDMI.VSG.FDGSR.HTSME.YDPNIDQWSMLGDMQ.A.EGAG.VVASGVI.CLGGYDGL | |
Retrocopy | *QGLAGATTRGDMICVSGDFDGSRCHTSMEWYDPNIDQWSMLGDMQAAQEGAGPVVASGVIHCLGGYDGL |
Parental | NILNSVEKYD-PHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM |
NILNSVEKY..PHTGH.TNVT.MA...SG.GVALLNDHIYVVGGFDGTAHLSS.EAYNI.TDSWTTVT.M | |
Retrocopy | NILNSVEKYT<PHTGHRTNVTSMAIECSGVGVALLNDHIYVVGGFDGTAHLSSNEAYNILTDSWTTVTNM |
Parental | TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE |
TT.RC.VGATVL.GRLYA..GYDGNSLLSSIECYDPII.SWEVVTSMGTQ.CDAGVC...E | |
Retrocopy | TTLRCNVGATVLWGRLYATSGYDGNSLLSSIECYDPIINSWEVVTSMGTQCCDAGVCSPQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 2 .58 RPM | 50 .87 RPM |
SRP007412_brain_prefrontal_cortex | 1 .67 RPM | 43 .39 RPM |
SRP007412_cerebellum | 4 .00 RPM | 44 .30 RPM |
SRP007412_heart | 0 .82 RPM | 19 .84 RPM |
SRP007412_kidney | 1 .17 RPM | 52 .35 RPM |
SRP007412_liver | 1 .03 RPM | 19 .63 RPM |
SRP007412_testis | 1 .02 RPM | 87 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006231 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010436 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007800 | 2 retrocopies | |
Homo sapiens | ENSG00000117153 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017849 | 1 retrocopy |
retro_mmul_612 ,
|
Nomascus leucogenys | ENSNLEG00000018103 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014771 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000343 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001861 | 1 retrocopy |