RetrogeneDB ID: | retro_mmus_1693 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:12174352..12174844(+) | ||
Located in intron of: | ENSMUSG00000024410 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Chtop | ||
Ensembl ID: | ENSMUSG00000001017 | ||
Aliases: | Chtop, 2500003M10Rik, C81330, Fop, Srag | ||
Description: | chromatin target of PRMT1 [Source:MGI Symbol;Acc:MGI:1913761] |
Percent Identity: | 77.59 % |
Parental protein coverage: | 77.23 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAV |
KQRLGKSNIQA.LGRPIGALA.GA.GGRG.PIIQRG.P.GG....R.TR.LLRGGMSLRGQNLLRGGRA. | |
Retrocopy | KQRLGKSNIQAQLGRPIGALATGALGGRGQPIIQRG-PCGG----RVTRNLLRGGMSLRGQNLLRGGRAL |
Parental | APRMGLRRGGVRGRGGPGRGGLG-RGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALTRPVLTKE |
A...GLRRG.V.GRGGPGRG..G.RG..G..G.G.RGRG...RG..G..GRG.G.G.GRG.LTRPVLTKE | |
Retrocopy | AAQVGLRRGRV*GRGGPGRGDPGCRGRIGGRGRGMRGRG---RGAFG--GRGCGCG*GRGDLTRPVLTKE |
Parental | QLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND |
QLDNQLDAYMSKTKGHLDAELDAYMAQTD.ETND | |
Retrocopy | QLDNQLDAYMSKTKGHLDAELDAYMAQTDLETND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 93 .59 RPM |
SRP007412_cerebellum | 0 .17 RPM | 79 .46 RPM |
SRP007412_heart | 0 .09 RPM | 64 .75 RPM |
SRP007412_kidney | 0 .02 RPM | 55 .73 RPM |
SRP007412_liver | 0 .03 RPM | 41 .21 RPM |
SRP007412_testis | 0 .00 RPM | 62 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013518 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010383 | 3 retrocopies | |
Felis catus | ENSFCAG00000002740 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016098 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001017 | 2 retrocopies |
retro_mmus_1693 , retro_mmus_1852,
|
Rattus norvegicus | ENSRNOG00000012760 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000660 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012442 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010259 | 1 retrocopy |