RetrogeneDB ID: | retro_mmus_1756 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:24928866..24929289(-) | ||
Located in intron of: | ENSMUSG00000034295 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrpl42 | ||
Ensembl ID: | ENSMUSG00000062981 | ||
Aliases: | Mrpl42, 2700009F22Rik, 2900055D03Rik, D10Ertd322e, HSPC204, L31mt, MRP-L31, PTD007, Rpml31 | ||
Description: | mitochondrial ribosomal protein L42 [Source:MGI Symbol;Acc:MGI:1333774] |
Percent Identity: | 67.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAAAVKWAISNRTIWKHLLPIQNGALSSACHKSTYSSLPDDYNCQVDLALTADGRTIVCYHPSVDIPYEH |
MAAAVKW.ISNRTIWKHL.P.QN..LS..CHKSTY.S.PDDYNC.V.L.LT...RT...YH.S.DIP..H | |
Retrocopy | MAAAVKWVISNRTIWKHLFPFQNENLSTVCHKSTYPSFPDDYNCKVELTLTSNARTLMYYHSSEDIPFKH |
Parental | TKPIPQPDLLHNNEETHEQILKAKLEVRKSKQLEQGPMIEQLSKVFYTTKHRWYPHGQYHNRRKKLNPPR |
TKPIPQPDLLHNNEE.HE..L..KL...K.KQ.E.G.MIEQL.KVF.TTKHRWY.H.....R.KK.NP.. | |
Retrocopy | TKPIPQPDLLHNNEEIHE*VLNTKLK-EKRKQCEPGLMIEQLGKVFFTTKHRWYLHRH*YRRHKKGNPLK |
Parental | DR |
DR | |
Retrocopy | DR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 22 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 26 .49 RPM |
SRP007412_heart | 0 .06 RPM | 174 .17 RPM |
SRP007412_kidney | 0 .04 RPM | 91 .44 RPM |
SRP007412_liver | 0 .00 RPM | 34 .38 RPM |
SRP007412_testis | 0 .00 RPM | 12 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_1383 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Mus musculus | ENSMUSG00000062981 | 7 retrocopies |
retro_mmus_1432, retro_mmus_1492, retro_mmus_1756 , retro_mmus_2140, retro_mmus_656, retro_mmus_721, retro_mmus_722,
|
Rattus norvegicus | ENSRNOG00000042740 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000026544 | 12 retrocopies |