RetrogeneDB ID: | retro_itri_1353 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393450.1:2663815..2664231(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000026544 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 50.34 % |
Parental protein coverage: | 98.59 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MASIAFKWVMSKRILWK-HLFPVQNSALSGVCHKSTFSSLPDDY-NCKVELALTSDGRTIVCYHPSVDIP |
MA..A.KWVM.KR.L.K...FP....AL...CH.ST..S.P.D....K.E.AL...GR.IV.YH.SVD.. | |
Retrocopy | MAAAAAKWVM*KRTLLK>NVFPIHIGALYCICHASTYPSFPYDH<HDKAEWAL-HHGRMIVHYHSSVDFL |
Parental | YEHTQPIPQPDPLHNNEETHDQVLK-TRLEEKDEHL-EEGPMIEKLSKMFFTTKHRWYPHGQYHRRRK-N |
Y..T..IP.P.P.HNNE....QV.K.TR...K..HL.E.GPMIE...KMF...K..WY....YHR..K.N | |
Retrocopy | YQPTESIPGPEPVHNNE*IPHQVMK<TR*AVKGGHL<EPGPMIEQVIKMFSIIKDCWYTYEEYHRCGK>N |
Parental | PNPPK |
.N.PK | |
Retrocopy | FNSPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |