RetrogeneDB ID: | retro_itri_1020 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393359.1:7278159..7278482(+) | ||
Located in intron of: | ENSSTOG00000003164 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000026544 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.27 % |
Parental protein coverage: | 75.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FSSLPDDYNCK-VELALTSDGRTIVCYHPSVDIPY--EHTQPIPQPDPLHNNEETHDQVLKTRLEEKDEH |
FSSLPDDYNCK..EL.LTS.GRT.VCYHPSVDIP....HTQPIPQP.P.HNN....DQVLKTR.EEK.EH | |
Retrocopy | FSSLPDDYNCK<IELTLTSEGRTTVCYHPSVDIPHMNTHTQPIPQPNPVHNNN-SNDQVLKTR*EEKYEH |
Parental | LEEGPMIEKLSKMFFTTKHRWYPHGQYHRRRKNPNPPKDR |
.E.GP.IEKLSKMFFTT.HRWYPHGQYHR..KN.N.PKDR | |
Retrocopy | FEQGPIIEKLSKMFFTTTHRWYPHGQYHRCFKNLNLPKDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |