RetrogeneDB ID: | retro_mmus_656 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:74862990..74863416(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000072407 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrpl42 | ||
Ensembl ID: | ENSMUSG00000062981 | ||
Aliases: | Mrpl42, 2700009F22Rik, 2900055D03Rik, D10Ertd322e, HSPC204, L31mt, MRP-L31, PTD007, Rpml31 | ||
Description: | mitochondrial ribosomal protein L42 [Source:MGI Symbol;Acc:MGI:1333774] |
Percent Identity: | 91.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAAVKWAISNRTIWKHLLPIQNGALSSACHKSTYSSLPDDYNCQVDLALTADGRTIVCYHPSVDIPYEH |
MA.AVKWAISNRTIWKHL.PIQNGALSSACHKSTYSSLPDDYNCQVDLALTADGRTIVCYHPSVDIPYEH | |
Retrocopy | MAGAVKWAISNRTIWKHLFPIQNGALSSACHKSTYSSLPDDYNCQVDLALTADGRTIVCYHPSVDIPYEH |
Parental | TKPIPQPDLLHNNEETHEQILKAKLEVRKSKQLEQGPMIEQLSKVFYTTKHRWYPHGQYHNRRKKLNPPR |
.KP.PQPDLLHNNEETHEQI.KAKLEVRK.K.LEQGPM.EQLSKVFYTTKHRWYPHGQYH.RRKK.NPP. | |
Retrocopy | SKPTPQPDLLHNNEETHEQIPKAKLEVRKRKPLEQGPMLEQLSKVFYTTKHRWYPHGQYHSRRKKQNPPK |
Parental | DR |
.R | |
Retrocopy | NR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 22 .50 RPM |
SRP007412_cerebellum | 0 .09 RPM | 26 .49 RPM |
SRP007412_heart | 0 .44 RPM | 174 .17 RPM |
SRP007412_kidney | 0 .33 RPM | 91 .44 RPM |
SRP007412_liver | 0 .08 RPM | 34 .38 RPM |
SRP007412_testis | 0 .00 RPM | 12 .94 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_5127 | 30 libraries | 3 libraries | 68 libraries | 192 libraries | 779 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Mus musculus | ENSMUSG00000062981 | 7 retrocopies |
retro_mmus_1432, retro_mmus_1492, retro_mmus_1756, retro_mmus_2140, retro_mmus_656 , retro_mmus_721, retro_mmus_722,
|
Rattus norvegicus | ENSRNOG00000042740 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000026544 | 12 retrocopies |