RetrogeneDB ID: | retro_mmus_1792 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:74420825..74421262(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | 4933434E20Rik | ||
Ensembl ID: | ENSMUSG00000027942 | ||
Aliases: | 4933434E20Rik, 5730552F22Rik, AI462154, NICE-3, NS5ATP4 | ||
Description: | RIKEN cDNA 4933434E20 gene [Source:MGI Symbol;Acc:MGI:1914027] |
Percent Identity: | 82.99 % |
Parental protein coverage: | 57.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QGNQSCYNYLYRMKALDAIRASEIPFHAEGRHPCSLMGKNFRSYLLDLRNTSTPFKGVGKALIDTLLDGY |
QGNQSCYNYL.R.KALDAIRASEIPFH.EG.HPCS.MGKNF.SYLLDL.NTS.PFKGV.KAL.DTLLD.Y | |
Retrocopy | QGNQSCYNYLDRTKALDAIRASEIPFHVEGWHPCSVMGKNFCSYLLDL*NTSPPFKGVEKALTDTLLDAY |
Parental | ETARYGTGVFGQSEYLRYQEALSELATVVKARIGSSQRQHQSAAKDLTQSPEMSPTTIQVTYL-PSSQKS |
.T..YGTGVFGQSEYLRYQEALSELATVVKA.IGSSQR.HQSAAK.L.Q.PEMSPT.IQ.TY..PSSQKS | |
Retrocopy | KTPCYGTGVFGQSEYLRYQEALSELATVVKA*IGSSQRRHQSAAKALPQPPEMSPTAIQITYR<PSSQKS |
Parental | KRPKHFL |
K.PK.FL | |
Retrocopy | KCPKYFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 39 .69 RPM |
SRP007412_cerebellum | 0 .00 RPM | 34 .26 RPM |
SRP007412_heart | 0 .00 RPM | 37 .23 RPM |
SRP007412_kidney | 0 .00 RPM | 41 .29 RPM |
SRP007412_liver | 0 .00 RPM | 21 .66 RPM |
SRP007412_testis | 0 .00 RPM | 64 .90 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009722 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005454 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001056 | 15 retrocopies | |
Macropus eugenii | ENSMEUG00000002600 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000013338 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017237 | 3 retrocopies | |
Mus musculus | ENSMUSG00000027942 | 6 retrocopies |
retro_mmus_1014, retro_mmus_1018, retro_mmus_1020, retro_mmus_1107, retro_mmus_1792 , retro_mmus_490,
|
Otolemur garnettii | ENSOGAG00000012008 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000007244 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000000785 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017758 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012915 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013866 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012777 | 1 retrocopy |