Parental gene:

4933434E20Rik, ENSMUSG00000027942

Aliases:4933434E20Rik, 5730552F22Rik, AI462154, NICE-3, NS5ATP4
Description:RIKEN cDNA 4933434E20 gene [Source:MGI Symbol;Acc:MGI:1914027]
Organism:Mouse (Mus musculus)
Coordinates:3:90051635..90063341(+)


>ENSMUSG00000027942
ATGGCGTCTAGTAGTAACTGGCTTTCTGGAGTGAATGTCGTGCTGGTGATGGCGTACGGGAGCCTGGTATTCGTACTGCT
GTTTATTTTTGTGAAGAGACAAATCATGCGCTTTGCAATGAAATCTAGAAGGGGACCTCATGTTCCTGTAGGACACAATG
CCCCCAAGGACTTAAAAGAGGAGATCGATATTCGACTATCCAGGGTTCAAGATATCAAGTATGAACCCCAGCTCCTTGCA
GATGATGATACCAGACTACTGCAGCTGGAAACCCAGGGGAATCAAAGTTGCTACAACTATCTGTACAGAATGAAAGCTCT
AGATGCCATCCGTGCCTCTGAGATCCCGTTTCATGCTGAAGGCCGGCACCCCTGTTCTTTAATGGGTAAGAATTTCCGCT
CCTACTTGCTAGATCTGCGAAATACTAGCACTCCTTTCAAGGGTGTTGGCAAGGCCCTCATTGATACTCTCCTGGATGGA
TATGAGACAGCCCGCTATGGGACAGGGGTCTTTGGCCAGAGTGAGTACTTACGATATCAAGAGGCCTTGAGTGAGCTGGC
CACTGTGGTCAAAGCACGAATTGGAAGTTCTCAGAGACAACACCAGTCAGCAGCCAAAGACCTAACTCAGTCACCTGAAA
TGTCACCAACAACAATCCAGGTCACATACCTGCCTTCCAGTCAGAAGAGCAAACGCCCTAAGCACTTCCTGGAACTGAAG
AGCTTTAAGGACAACTATAACACACTGGAGAGCACTCTGTGA

Library Parental gene expression (RPM)
SRP007412_brain 39 .69 RPM
SRP007412_cerebellum 34 .26 RPM
SRP007412_heart 37 .23 RPM
SRP007412_kidney 41 .29 RPM
SRP007412_liver 21 .66 RPM
SRP007412_testis 64 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009722 ortholog_one2many 1 retrogene
retro_cjac_175,
Dipodomys ordii ENSDORG00000005454 ortholog_one2one 1 retrogene
retro_dord_190,
Echinops telfairi ENSETEG00000001056 possible_ortholog 15 retrogenes
retro_etel_1138, retro_etel_1318, retro_etel_1388, retro_etel_1633, retro_etel_2182, retro_etel_2205, retro_etel_2206, retro_etel_394, retro_etel_651, retro_etel_719, retro_etel_720, retro_etel_773, retro_etel_842, retro_etel_957, retro_etel_981,
Macropus eugenii ENSMEUG00000002600 ortholog_one2one 6 retrogenes
retro_meug_1149, retro_meug_1298, retro_meug_1439, retro_meug_1637, retro_meug_213, retro_meug_69,
Myotis lucifugus ENSMLUG00000013338 possible_ortholog 1 retrogene
retro_mluc_537,
Monodelphis domestica ENSMODG00000017237 ortholog_one2one 3 retrogenes
retro_mdom_1283, retro_mdom_2003, retro_mdom_323,
Otolemur garnettii ENSOGAG00000012008 possible_ortholog 2 retrogenes
retro_ogar_2563, retro_ogar_38,
Ochotona princeps ENSOPRG00000007244 ortholog_one2one 2 retrogenes
retro_opri_426, retro_opri_586,
Pongo abelii ENSPPYG00000000785 ortholog_one2one 2 retrogenes
retro_pabe_3590, retro_pabe_969,
Rattus norvegicus ENSRNOG00000017758 ortholog_one2many 1 retrogene
retro_rnor_139,
Sarcophilus harrisii ENSSHAG00000012915 ortholog_one2one 1 retrogene
retro_shar_740,
Tupaia belangeri ENSTBEG00000013866 ortholog_one2one 1 retrogene
retro_tbel_177,
Tarsius syrichta ENSTSYG00000012777 ortholog_one2one 1 retrogene
retro_tsyr_91,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_490 82.68 70.75
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2. retro_mmus_1014 94.09 100.00
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3. retro_mmus_1018 94.47 100.00
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4. retro_mmus_1020 94.86 100.00
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5. retro_mmus_1107 94.86 100.00
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6. retro_mmus_1792 82.99 57.71
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Download FASTA sequences of all ENSMUSG00000027942 retrocopies