RetrogeneDB ID: | retro_mmus_2449 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:34389458..34389847(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082649 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps27a | ||
Ensembl ID: | ENSMUSG00000020460 | ||
Aliases: | Rps27a, 0610006J14Rik, Uba52, Ubb, Ubc | ||
Description: | ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544] |
Percent Identity: | 78.63 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDYNIQKESTLHLVL |
IFVK...GKTI.LE.EPSDTI.N.KAKIQDKEG..PDQQ..LI.AGKQLEDGRTLSDYNIQ.ESTLHLVL | |
Retrocopy | IFVKSHVGKTIMLEAEPSDTIKNAKAKIQDKEGLLPDQQ<ELIIAGKQLEDGRTLSDYNIQMESTLHLVL |
Parental | RLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFM |
R..GGAKKR.K.SYT.PKKN.HK.KKVKLAVLK.Y.VDENG.IS...REC.SDE.GAGVFM | |
Retrocopy | RFHGGAKKRRKRSYTIPKKNNHKMKKVKLAVLKCYMVDENGRISQPCRECHSDERGAGVFM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 54 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .27 RPM |
SRP007412_heart | 0 .00 RPM | 37 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 40 .75 RPM |
SRP007412_liver | 0 .00 RPM | 49 .78 RPM |
SRP007412_testis | 2 .38 RPM | 26 .89 RPM |