RetrogeneDB ID: | retro_mmus_2499 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:109373700..109374859(-) | ||
Located in intron of: | ENSMUSG00000028552 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083512 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Bzw1 | ||
Ensembl ID: | ENSMUSG00000051223 | ||
Aliases: | Bzw1, 1200015E15Rik, mKIAA0005 | ||
Description: | basic leucine zipper and W2 domains 1 [Source:MGI Symbol;Acc:MGI:1914132] |
Percent Identity: | 88.95 % |
Parental protein coverage: | 92.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MNNQKQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVA-KFLDASGAKLDYRRYAET |
MNNQKQQ.PTLSGQRFKTRKRDEKERF.PTQFQDCIIQG.TETGTDLEAVA.KFLDASGAKLDY.R.AET | |
Retrocopy | MNNQKQQNPTLSGQRFKTRKRDEKERFGPTQFQDCIIQGFTETGTDLEAVA<KFLDASGAKLDYHRFAET |
Parental | LFDILVAGGMLAPGGTLADDMMRTDVCVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFL |
LFDILVAGGMLAPGGTLADDMMRTDVCV.AAQEDLETMQAF.Q.FNKL.RRY.Y.EKGFEDEVKKLLLFL | |
Retrocopy | LFDILVAGGMLAPGGTLADDMMRTDVCVCAAQEDLETMQAFTQAFNKLTRRYRYPEKGFEDEVKKLLLFL |
Parental | KGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEK-DINAVAASLRK |
KGFSE.E.NKLAMLTGVLLANGTLNASILNSLYNENLVK..VSAAFAVKLFKSWINEK.DINAVAASLR. | |
Retrocopy | KGFSEPEKNKLAMLTGVLLANGTLNASILNSLYNENLVKKRVSAAFAVKLFKSWINEK<DINAVAASLRR |
Parental | VSMDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYV |
VSMDN.LMELFPA.KQS..HFTKYFTEAGLKELSEYVRNQQTIGARKEL.KELQEQMS.GDPFKDIILYV | |
Retrocopy | VSMDNKLMELFPASKQSDGHFTKYFTEAGLKELSEYVRNQQTIGARKELWKELQEQMSHGDPFKDIILYV |
Parental | KEEMKKNNIPEPVVIGI-VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFTTQGQSELTLLLKIQE |
KEEMKK.........G..VWSSVMSTVEWNKKEELVAEQAIKHLKQ.SPLLAAFT..GQSELTLLL..QE | |
Retrocopy | KEEMKKVTFQNQW*LGWRVWSSVMSTVEWNKKEELVAEQAIKHLKQCSPLLAAFTAKGQSELTLLLETQE |
Parental | YCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHV |
YCYDNIHFMKAFQ.IVVLFYKAE.LSEEPILKWYKD.HV | |
Retrocopy | YCYDNIHFMKAFQRIVVLFYKAEALSEEPILKWYKDTHV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .28 RPM | 117 .94 RPM |
SRP007412_cerebellum | 0 .09 RPM | 79 .63 RPM |
SRP007412_heart | 0 .00 RPM | 50 .00 RPM |
SRP007412_kidney | 0 .10 RPM | 108 .74 RPM |
SRP007412_liver | 0 .03 RPM | 108 .11 RPM |
SRP007412_testis | 0 .05 RPM | 158 .85 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_99083 | 641 libraries | 401 libraries | 29 libraries | 1 library | 0 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011878 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003543 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000010449 | 1 retrocopy | |
Homo sapiens | ENSG00000082153 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000016296 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012344 | 1 retrocopy | |
Mus musculus | ENSMUSG00000051223 | 3 retrocopies |
retro_mmus_2499 , retro_mmus_751, retro_mmus_990,
|
Nomascus leucogenys | ENSNLEG00000006929 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012791 | 1 retrocopy |