RetrogeneDB ID: retro_mputfur_1174

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897034.1:2918398..2919442(+)
• Located in intron of: ENSMPUG00000008838

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BZW1
• Ensembl ID: ENSMPUG00000012344
• Aliases: None
• Description: basic leucine zipper and W2 domains 1 [Source:HGNC Symbol;Acc:18380]

Sequence

>retro_mputfur_1174
TTTGACATTCTGGTGGCCGGCGGAATGCTGGCCCCAGGTGGTACGCTGGCAGATGACATGATGCGGACAGATGTCTGTGT
GTTCGCGGCACAAGAAGAGCTAGAGACCATGCAAGCATTTGCTCAGGTTTTTAACAAGTTAATCAGGTGCTACAAATACC
TGGAGAAAAGTTTTGAAGATGAAGTAAAAAAGCTGCTGCTGTTCTTAAAGGGTTTTTCAGAGTTGGAGAGAAACAAGCTG
GCTATGTTGACTGGTGTTCTTCTGGCTAATGGAACACTTAATGCATCCATTCTTAATAGCCTTTATAATGAGAATTTGGT
TAAAGAAGGGGTTTCAGCAGCTTTTGCTGTAAAGCTCTTTAAATCATGGATAAATGAAAAAGATATCAATGCCGTGGCTG
CAAGTCTTCAGAAAGTGAGCATGGATAACAGACTGATGGAACTTCGTCCTGCCAATAAACAGAGCGTTGAACACTTCACG
AAGTACTTTACAGAGGCAGGCTTGAAAGAACTTTTGGAATATGTTCGGAATCAGCAAACCATAGGAGCTCGAAAGGAACT
CCAGAAAGACCTTCAAGAACAGATGTCCCGTGGTGACCCATTTAAGGATATAATTTTGTATGTCAAGGAGGAGATGAAAA
AAAACAACATCCCAGAACCCGTTGTCACTGGGATAGTCTGGTCCAACGTCATGAGCACCGTGGAGTGGAACAAAAAGGAA
GAGCTTGTAGCAGAGCAAGCCATCAAGCACTTGAAGCAATACAGCCCTCTACTTGCTGCCTTTACTACTCACGGTCAGTC
TGAGCTTCTGTTACTGAAGATTCAGGAGTATTGCTATGACAACATTCATTTCATGAAAGCCTTCCAGAAAATAGTGGTGC
TTTTTTATAAAGCTGAAGTCCTGAGTGAGGAGCCCATTCTGAAGTGGTATAAGGATGCACATGTTGCAAAGGGGAAGAGT
GTCTTCCTTGAGCAAATGAAAAAGTTTGTAGAGTGGCTCAAAAATGCTGAAGAAGAATCTGAGTCTGAAGCTGAAGAAGG
TGAC

Alignment

ORF - retro_mputfur_1174 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.43 %
• Parental protein coverage: 82.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FDILVAGGMLAPGGTLADDMMRTDVCVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLK
          FDILVAGGMLAPGGTLADDMMRTDVCVFAAQE.LETMQAFAQVFNKLIR.YKYLEK.FEDEVKKLLLFLK
Retrocopy FDILVAGGMLAPGGTLADDMMRTDVCVFAAQEELETMQAFAQVFNKLIRCYKYLEKSFEDEVKKLLLFLK

Parental  GFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVS
          GFSE.ERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASL.KVS
Retrocopy GFSELERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLQKVS

Parental  MDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKE
          MDNRLMEL.PANKQSVEHFTKYFTEAGLKEL.EYVRNQQTIGARKELQK.LQEQMSRGDPFKDIILYVKE
Retrocopy MDNRLMELRPANKQSVEHFTKYFTEAGLKELLEYVRNQQTIGARKELQKDLQEQMSRGDPFKDIILYVKE

Parental  EMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKKQYSPLLAAFTTQGQSELTLLLKIQEYC
          EM...NIPEPVV.GIVWS.VMSTVEWNKKEELVAEQAIKHL.KQYSPLLAAFTT.GQSEL.LLLKIQEYC
Retrocopy EMXXXNIPEPVVTGIVWSNVMSTVEWNKKEELVAEQAIKHL-KQYSPLLAAFTTHGQSEL-LLLKIQEYC

Parental  YDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEESESEAEEGD
          YDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEESESEAEEGD
Retrocopy YDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEESESEAEEGD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1174 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1174 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000011878	1 retrocopy	retro_cfam_2150,
Choloepus hoffmanni	ENSCHOG00000003543	8 retrocopies	retro_chof_1519, retro_chof_2060, retro_chof_2092, retro_chof_2451, retro_chof_2517, retro_chof_689, retro_chof_726, retro_chof_838,
Cavia porcellus	ENSCPOG00000010449	1 retrocopy	retro_cpor_331,
Homo sapiens	ENSG00000082153	2 retrocopies	retro_hsap_2832, retro_hsap_2881,
Gorilla gorilla	ENSGGOG00000016296	1 retrocopy	retro_ggor_1997,
Mustela putorius furo	ENSMPUG00000012344	1 retrocopy	retro_mputfur_1174 ,
Mus musculus	ENSMUSG00000051223	3 retrocopies	retro_mmus_2499, retro_mmus_751, retro_mmus_990,
Nomascus leucogenys	ENSNLEG00000006929	1 retrocopy	retro_nleu_621,
Pan troglodytes	ENSPTRG00000012791	1 retrocopy	retro_ptro_1949,