RetrogeneDB ID: | retro_mmus_751 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:105773517..105774195(+) | ||
Located in intron of: | ENSMUSG00000053580 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083465 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Bzw1 | ||
Ensembl ID: | ENSMUSG00000051223 | ||
Aliases: | Bzw1, 1200015E15Rik, mKIAA0005 | ||
Description: | basic leucine zipper and W2 domains 1 [Source:MGI Symbol;Acc:MGI:1914132] |
Percent Identity: | 93.36 % |
Parental protein coverage: | 53.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MNNQKQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYRRYAETL |
MNNQKQQKPTLSGQRFKTRKRDEKERFDPT.FQDCIIQGLTETGTDLEA.AKFLDASGAKLDYRRYAETL | |
Retrocopy | MNNQKQQKPTLSGQRFKTRKRDEKERFDPT*FQDCIIQGLTETGTDLEAGAKFLDASGAKLDYRRYAETL |
Parental | FDILVAGGMLAPGGTLADDMMRTDVCVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLK |
FDILV.GGMLAPGGTLADDMMRTDVCV.AAQEDLETMQAFAQVFNKL.R.YKYLEK.FEDEVKKLLLFLK | |
Retrocopy | FDILVTGGMLAPGGTLADDMMRTDVCVCAAQEDLETMQAFAQVFNKLTRCYKYLEKDFEDEVKKLLLFLK |
Parental | GFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVS |
GFSESERNKLAMLTGVLLANGTL.ASILNSLYNENLVKEGVSAAFAVKLFKSWIN.K..NAVAASL.KVS | |
Retrocopy | GFSESERNKLAMLTGVLLANGTLSASILNSLYNENLVKEGVSAAFAVKLFKSWINKKELNAVAASLQKVS |
Parental | MDNRLMELFPANKQSV |
MDN.LMELFPA.KQ.V | |
Retrocopy | MDNKLMELFPASKQKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 117 .94 RPM |
SRP007412_cerebellum | 0 .00 RPM | 79 .63 RPM |
SRP007412_heart | 0 .06 RPM | 50 .00 RPM |
SRP007412_kidney | 0 .13 RPM | 108 .74 RPM |
SRP007412_liver | 0 .00 RPM | 108 .11 RPM |
SRP007412_testis | 0 .00 RPM | 158 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011878 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003543 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000010449 | 1 retrocopy | |
Homo sapiens | ENSG00000082153 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000016296 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012344 | 1 retrocopy | |
Mus musculus | ENSMUSG00000051223 | 3 retrocopies |
retro_mmus_2499, retro_mmus_751 , retro_mmus_990,
|
Nomascus leucogenys | ENSNLEG00000006929 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012791 | 1 retrocopy |