RetrogeneDB ID: | retro_mmus_497 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:145164950..145165967(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldha | ||
Ensembl ID: | ENSMUSG00000063229 | ||
Aliases: | Ldha, Ldh1, Ldhm, l7R2 | ||
Description: | lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759] |
Percent Identity: | 82.75 % |
Parental protein coverage: | 94.18 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | VSKDSKSKMATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEM |
VSKDSKSKMA.LKDQLIVNLL.EEQ.P..KITVVGVGAVGMA..ISIL.KDLADEL.L.DVMEDKLKGEM | |
Retrocopy | VSKDSKSKMAILKDQLIVNLLQEEQVP*DKITVVGVGAVGMAFVISILWKDLADELDLADVMEDKLKGEM |
Parental | MDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGA-RQQEGESRLNLVQRNVNIFKFIIPNIVKYSPHC |
MDLQHGSLFLKTPK.VSSKD.CVTANSKLV.ITAGA.RQQEGE.RLNLVQ.N.NIFKFIIPNIVK.SPH. | |
Retrocopy | MDLQHGSLFLKTPKLVSSKDNCVTANSKLVVITAGA<RQQEGEIRLNLVQ*NMNIFKFIIPNIVKHSPHY |
Parental | KLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVPVW |
KLLIVSNPVDILTYVA.KIS.FPK..VIGS.C.LDS.RF.YL..ERLGV.A.SCHGWVLGEHGDS.VPVW | |
Retrocopy | KLLIVSNPVDILTYVA*KISCFPKS*VIGS-CTLDSDRFHYLIRERLGVQAVSCHGWVLGEHGDSGVPVW |
Parental | SGVNV-AGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRV |
SGVN..AGV.LK.LNPE.GT.ADKEQWKEVHKQV.DS..EVIKLKGYTSWAIGLSVADLA...MKNLR.. | |
Retrocopy | SGVNM>AGVFLKPLNPEPGTYADKEQWKEVHKQVLDSV*EVIKLKGYTSWAIGLSVADLAATKMKNLRWM |
Parental | HPISTMIKGLYGINEDVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF |
.P.STMIK.L.G.N.DVFLSVPCILGQNG.SDVVK.TLTPEEE..LKKSADTLW..QKEL.F | |
Retrocopy | YPVSTMIK*LSGLNGDVFLSVPCILGQNGTSDVVKMTLTPEEEGLLKKSADTLWETQKELHF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 162 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 72 .30 RPM |
SRP007412_heart | 0 .06 RPM | 465 .65 RPM |
SRP007412_kidney | 0 .06 RPM | 344 .67 RPM |
SRP007412_liver | 0 .00 RPM | 394 .74 RPM |
SRP007412_testis | 0 .00 RPM | 722 .17 RPM |