RetrogeneDB ID: | retro_mmus_3644 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:77757380..77758040(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081164 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5c1 | ||
Ensembl ID: | ENSMUSG00000025781 | ||
Aliases: | Atp5c1, 1700094F02Rik | ||
Description: | ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:MGI Symbol;Acc:MGI:1261437] |
Percent Identity: | 88.24 % |
Parental protein coverage: | 74.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | TGSLALYEKADIKAPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGI |
.GS..L........PED.KKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGK.VMIV.VGEKIK.I | |
Retrocopy | SGS*SLLKRME-QGPEDNKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKKVMIV*VGEKIKVI |
Parental | LYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSLNTIA |
LYRTHSDQFLVSFKDV..KPPTFGDA.VIALE.LNSGYEFD..SIIFNQFK.VISYKTEEKPIFSLNTIA | |
Retrocopy | LYRTHSDQFLVSFKDVRQKPPTFGDAPVIALEFLNSGYEFDNDSIIFNQFKLVISYKTEEKPIFSLNTIA |
Parental | TAETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAMDNASKNASDMIDKLTLTFNRTRQ |
TAETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAMDN.SKNASDMIDKLTLTFN.TRQ | |
Retrocopy | TAETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAMDNTSKNASDMIDKLTLTFNHTRQ |
Parental | AVITKELIEII |
.VITKEL.EII | |
Retrocopy | DVITKELVEII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 129 .27 RPM |
SRP007412_cerebellum | 0 .00 RPM | 119 .76 RPM |
SRP007412_heart | 0 .25 RPM | 575 .78 RPM |
SRP007412_kidney | 0 .13 RPM | 361 .03 RPM |
SRP007412_liver | 0 .03 RPM | 140 .94 RPM |
SRP007412_testis | 0 .05 RPM | 55 .62 RPM |