RetrogeneDB ID: | retro_tsyr_465 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_122819:4125..4662(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5C1 | ||
Ensembl ID: | ENSTSYG00000003035 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:HGNC Symbol;Acc:833] |
Percent Identity: | 70.43 % |
Parental protein coverage: | 67.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | EVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLAAFKEV-GRKP-PTFGDASVIALELLNSGYEFDEGS |
.VATLT.AGKEVM.VGIGDK.R..L.RTHSDQFLAA.KE..G..P.P.FGDA..IALELLNSGYEF.EGS | |
Retrocopy | KVATLTVAGKEVMHVGIGDKLRDTLCRTHSDQFLAALKEM<GKSP<PAFGDALAIALELLNSGYEFNEGS |
Parental | IIFNRFRSVISYKTEEKPI-FSLNTIAGAESMSIYDDIDADVLQNYQEYNLA-NIIYYSLKESTTSEQSA |
IIF.RFRSVI..K.EEK.I.FSLNT.A...SMSIYDD..A.VL.NYQEYNLA...IYYSLKES.TSEQSA | |
Retrocopy | IIFRRFRSVICHKAEEKFI>FSLNTTANTDSMSIYDDFAAGVL*NYQEYNLA<HTIYYSLKES-TSEQSA |
Parental | RMTAMDNASK-NASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL |
R.T.MDNA.K...SEM.D..TLTF..T..AV.TKEL.E.I...A.L | |
Retrocopy | RITVMDNAGK<DPSEMTDQSTLTFSCT*HAVKTKELTEMICSSAVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |