RetrogeneDB ID: | retro_mmus_2008 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:10959132..10959661(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082871 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5c1 | ||
Ensembl ID: | ENSMUSG00000025781 | ||
Aliases: | Atp5c1, 1700094F02Rik | ||
Description: | ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:MGI Symbol;Acc:MGI:1261437] |
Percent Identity: | 67.04 % |
Parental protein coverage: | 59.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | TAAGKEVMIVGVGEKI-KGILYRTHSDQFLVSFKDVGRKPPTF-GDASVIALELLNSGYEFDEGSIIFNQ |
TAA..EV...G.......GILYRT.SDQF.V.FKDV..KPP.F.GD.S.IAL.LLN.GYEFDEG.IIFNQ | |
Retrocopy | TAAAREVIFAGISXXX>RGILYRTCSDQFGVPFKDVA*KPPIF>GDLSIIALGLLNFGYEFDEGYIIFNQ |
Parental | FKSVISYKTEEKPIFSLNTIATAETMSI-YDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAMD |
.KS.I.YKT.EKPIFSLNT.ATAE.MS..YD..DAD.LQ.YQE.NLA..IYY.LK.STTSEQSARMT..D | |
Retrocopy | LKSIICYKTKEKPIFSLNTVATAENMST<YDVTDADLLQSYQEINLASIIYYTLKASTTSEQSARMTTTD |
Parental | NASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAAL |
N..KNAS.MIDKL........Q.VITKE..EIISG..AL | |
Retrocopy | NCRKNASAMIDKLDSMYKCMHQDVITKEWVEIISGTTAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 129 .27 RPM |
SRP007412_cerebellum | 0 .00 RPM | 119 .76 RPM |
SRP007412_heart | 0 .00 RPM | 575 .78 RPM |
SRP007412_kidney | 0 .00 RPM | 361 .03 RPM |
SRP007412_liver | 0 .00 RPM | 140 .94 RPM |
SRP007412_testis | 0 .00 RPM | 55 .62 RPM |