RetrogeneDB ID:

retro_mputfur_1030

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896998.1:6257694..6258961(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMPUG00000009324
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:EEF1A2
Ensembl ID:ENSMPUG00000008289
Aliases:None
Description:eukaryotic translation elongation factor 1 alpha 2 [Source:HGNC Symbol;Acc:3192]


Retrocopy-Parental alignment summary:






>retro_mputfur_1030
ATGGGGAAGGAAAAGGCTCTATCTACATTGTTGTCATTGGACACGTAGATTCAGGCAAGTCTACCACTACTGGTCATCTG
ATCTACAAATGTGGTGGGATCGACAAAAGAACTATCAAAAAATTTGAGAAGGAGGCTACTGAGATGGGAAAAGTCTCCTT
CAAGTATGCATGGGTCTTGGATAAACTGAAAGCTGAACATGAACGTGATATCACCATTGATATCTCCCTGTGGAAATTCG
AGACCAGCAAGTATTATGTGACTATCACATACTCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGCACATCTCA
GGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCCAGTATCTCCAAGAATGGGCAGACCCGTG
AGCATGCCTTTCTGGCTTACACACTGGGTGTAAAACAACTAATTGTTGGTGTTAACAAAATGGATTCCACTGAGCCACCC
TACAGCCAGAAGAGATATGAGGAAATCTTTAAGGAAGTCAGCATCTACATTAAGAAAATTGGCTACAACCCCAACACAGT
AGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTTACATGCCTTGGTTCAAGGGATGGA
AAGTCATCCATAAAGATGGGAATGCCAGTGGAACCACACTGCTTGAAGCTCTGGATTGCAACTTGCCACTAGCTCGTCCA
ACTGACAAGCCCTTGCGTCTGCCTCTCCAGGACATCTACATTATTGGTGTTATTGGTTCTGCCCCTGTGAGCCGAGTGGA
GACTGGTGTTCTTAAACCTGGCATGGTGGTCACCTTTTCTCCAGTCAACGTTACAACTGAAGTCAAGTCTGTTGAAATGC
ACCATGAAGCTTTGAGTGAGGCTCTTCCTGGGGACAGTGTGGGCTTCAATGTCAAGAACGTATCTGTCAAAGATGTTTGT
CGTGGCAATGTGACTGGTTACAGCAAAAATGACCCACCAATGGAAGCAGTTGTCTTTATAGCTCAGGTGATTATCCTGAA
CCATCCAGGCCAAATTAATGCTGGATATGCACCTGTGCTGGATTGTCACACAGCTGCTCACATTGCTTGCTTGCAAGTTT
GCTGAGCTGAAGGAGAAGATAGATCGTCATTCTGGAAAAAAGTTGGAAGATGGTCCCAAGTTCTTGAACTCTGGTGACGC
TGCCATTGTTGATATGGTTCCTGGCAAGCCTATGTGTGTTGAGAGCTTCTCTGACTATCCTCCTCTG

ORF - retro_mputfur_1030 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.46 %
Parental protein coverage: 99.76 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMGKEKT-HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER
MGKEK...I.IVVIGHVDSGKSTTTGHLIYKCGGIDKRTI.KFEKEA.EMGK.SFKYAWVLDKLKAE.ER
RetrocopyMGKEKA<SIYIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIKKFEKEATEMGKVSFKYAWVLDKLKAEHER
ParentalGITIDISLWKFETTKYYITIID-APGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHAL
.ITIDISLWKFET.K.Y...I...PGHRDFIKNMITGTSQADCAVLIVAAGVGEFEA.ISKNGQTREHA.
RetrocopyDITIDISLWKFETSK-YYVTIT>TPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEASISKNGQTREHAF
ParentalLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNM
LAYTLGVKQLIVGVNKMDSTEP.YS.KRY.EI.KEVS.YIKKIGYNP.TV.FVPISGW.GDNMLEPS..M
RetrocopyLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIFKEVSIYIKKIGYNPNTVAFVPISGWNGDNMLEPSAYM
ParentalPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLRPGMVV
PWFKGWKV..K.GNASG..LLEALD..LP..RPTDKPLRLPLQD.Y.IG.IG..PV.RVETGVL.PGMVV
RetrocopyPWFKGWKVIHKDGNASGTTLLEALDCNLPLARPTDKPLRLPLQDIYIIGVIGSAPVSRVETGVLKPGMVV
ParentalTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILN
TF.PVN.TTEVKSVEMHHEALSEALPGD.VGFNVKNVSVKD..RGNV.G.SK.DPP.EA..F..QVIILN
RetrocopyTFSPVNVTTEVKSVEMHHEALSEALPGDSVGFNVKNVSVKDVCRGNVTGYSKNDPPMEAVVFIAQVIILN
ParentalHPGQISAGYSPVIDCHT-AHIACKFAELKEKIDRRS-GKK-LEDNPKALKSGDAAIVEMVPGKPMCVESF
HPGQI.AGY.PV.DCHT.AHIAC......E..DR.S..KK.LED.PK.L.SGDAAIV.MVPGKPMCVESF
RetrocopyHPGQINAGYAPVLDCHTAAHIACLQVC*AEGEDRSSFWKK>LEDGPKFLNSGDAAIVDMVPGKPMCVESF
ParentalSQYPPL
S.YPPL
RetrocopySDYPPL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_1030 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_1030 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 15 parental genes, and 61 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000132491 retrocopy
retro_cfam_1007,
Equus caballus ENSECAG000000222601 retrocopy
retro_ecab_802,
Latimeria chalumnae ENSLACG000000029521 retrocopy
retro_lcha_39,
Loxodonta africana ENSLAFG000000280811 retrocopy
retro_lafr_651,
Macropus eugenii ENSMEUG0000000501823 retrocopies
retro_meug_1067, retro_meug_110, retro_meug_1160, retro_meug_1240, retro_meug_1334, retro_meug_135, retro_meug_1421, retro_meug_1451, retro_meug_1465, retro_meug_1501, retro_meug_1662, retro_meug_1690, retro_meug_1710, retro_meug_1829, retro_meug_2023, retro_meug_2044, retro_meug_2050, retro_meug_316, retro_meug_601, retro_meug_755, retro_meug_792, retro_meug_850, retro_meug_920,
Myotis lucifugus ENSMLUG000000167601 retrocopy
retro_mluc_1250,
Mustela putorius furoENSMPUG000000038166 retrocopies
retro_mputfur_1514, retro_mputfur_1643, retro_mputfur_220, retro_mputfur_502, retro_mputfur_844, retro_mputfur_862,
Mustela putorius furoENSMPUG0000000427110 retrocopies
retro_mputfur_1179, retro_mputfur_1276, retro_mputfur_1351, retro_mputfur_1394, retro_mputfur_284, retro_mputfur_355, retro_mputfur_474, retro_mputfur_678, retro_mputfur_920, retro_mputfur_973,
Mustela putorius furoENSMPUG00000008289 3 retrocopies
retro_mputfur_1030 , retro_mputfur_609, retro_mputfur_761,
Nomascus leucogenys ENSNLEG000000100602 retrocopies
retro_nleu_11, retro_nleu_1489,
Ornithorhynchus anatinus ENSOANG000000049081 retrocopy
retro_oana_73,
Otolemur garnettii ENSOGAG000000046308 retrocopies
retro_ogar_1067, retro_ogar_2034, retro_ogar_2329, retro_ogar_2497, retro_ogar_2583, retro_ogar_3191, retro_ogar_3270, retro_ogar_643,
Ictidomys tridecemlineatus ENSSTOG000000288621 retrocopy
retro_itri_1028,
Tursiops truncatus ENSTTRG000000018351 retrocopy
retro_ttru_993,
Drosophila melanogaster FBgn00005571 retrocopy
retro_dmel_9,


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