RetrogeneDB ID: retro_nleu_1406

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397292.1:17454376..17454645(+)
• Located in intron of: ENSNLEG00000004283

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FKBP1B
• Ensembl ID: ENSNLEG00000000800
• Aliases: None
• Description: Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:G1QJ44]

Sequence

>retro_nleu_1406
AGGCAGAGCCAGATGTGTGTAGCGCACTACATAGGGATGTTCCAAAATGGGAATAAATTTGATATATCCCAAGACAGAAA
CAAACTTTTCCAGTTCAAAATTGTGGAACAGGAAGTCATCAATGGTTTTGAAGAGTACACAGCGCAGATGAGCTTGGGGC
TGAAGGTGAAGCTGACCTGCATACGTGATGTGTCATACAGAGCTCCAGGCTACTCTAGTGTCATCCCTCCCACTGCTACC
CTATCTTTGACATGGAACTGCTCAACTTA

Alignment

ORF - retro_nleu_1406 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.84 %
• Parental protein coverage: 83.33 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATG
          ...Q.CV.HY.GM.QNG.KFD.S.DRNK.F.F.I..QEVI.GFEE..AQMSLG...KLTC..DV.Y.A.G
Retrocopy RQSQMCVAHYIGMFQNGNKFDISQDRNKLFQFKIVEQEVINGFEEYTAQMSLGLKVKLTCIRDVSYRAPG

Parental  HPGVIPPNATL-IFDVELLNL
          ...VIPP.ATL.IFD.ELLNL
Retrocopy YSSVIPPTATL<IFDMELLNL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1406 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000007700	1 retrocopy	retro_cjac_696,
Ciona savignyi	ENSCSAVG00000006859	1 retrocopy	retro_csav_11,
Equus caballus	ENSECAG00000015664	1 retrocopy	retro_ecab_752,
Homo sapiens	ENSG00000119782	1 retrocopy	retro_hsap_1329,
Macropus eugenii	ENSMEUG00000010689	1 retrocopy	retro_meug_14,
Macaca mulatta	ENSMMUG00000012341	1 retrocopy	retro_mmul_2171,
Nomascus leucogenys	ENSNLEG00000000800	1 retrocopy	retro_nleu_1406 ,
Nomascus leucogenys	ENSNLEG00000002835	1 retrocopy	retro_nleu_2291,
Nomascus leucogenys	ENSNLEG00000009356	5 retrocopies	retro_nleu_2009, retro_nleu_2628, retro_nleu_2728, retro_nleu_2730, retro_nleu_604,
Pongo abelii	ENSPPYG00000012604	1 retrocopy	retro_pabe_1105,
Pan troglodytes	ENSPTRG00000011708	1 retrocopy	retro_ptro_906,