RetrogeneDB ID: | retro_pabe_1105 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:41730300..41730572(+) | ||
Located in intron of: | ENSPPYG00000005771 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP1B | ||
Ensembl ID: | ENSPPYG00000012604 | ||
Aliases: | None | ||
Description: | FK506 binding protein 1B, 12.6 kDa [Source:HGNC Symbol;Acc:3712] |
Percent Identity: | 69.57 % |
Parental protein coverage: | 84.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATG |
KK.Q.CV.HY.GM.QNG..FD.S.DRNKPFKF..G.QEVI.GFEE..AQMSLGQ..KLTC..DV.Y.A.G | |
Retrocopy | KKSQMCVAHYIGMFQNGDRFDLSQDRNKPFKFKTGEQEVINGFEEYLAQMSLGQKVKLTCIHDVSYRAPG |
Parental | HPGVIPPNATL-IFDVELLNLE |
...VIPP.ATL.IFD.ELLNLE | |
Retrocopy | YSSVIPPSATL<IFDMELLNLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 25 .60 RPM |
SRP007412_cerebellum | 0 .00 RPM | 40 .37 RPM |
SRP007412_heart | 0 .00 RPM | 0 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 1 .13 RPM |
SRP007412_liver | 0 .00 RPM | 3 .43 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1329 |
Pan troglodytes | retro_ptro_906 |
Gorilla gorilla | retro_ggor_1036 |
Macaca mulatta | retro_mmul_2171 |
Callithrix jacchus | retro_cjac_696 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007700 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006859 | 1 retrocopy | |
Equus caballus | ENSECAG00000015664 | 1 retrocopy | |
Homo sapiens | ENSG00000119782 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010689 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012341 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000800 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004149 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000010852 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000012604 | 1 retrocopy |
retro_pabe_1105 ,
|
Pan troglodytes | ENSPTRG00000011708 | 1 retrocopy |