RetrogeneDB ID: | retro_nleu_756 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397272.1:35930483..35930973(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLNS1A | ||
Ensembl ID: | ENSNLEG00000016699 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.71 % |
Parental protein coverage: | 69.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVE-PITEFRFVPSDKSALEAMFTAMCECQALHPDPEDE |
LGEHLY.MV.AKFEE.S.E.VADEEEE.SD.D.E..IT.FRFVPSDKSALEA.F.AMCECQ.LHPD.EDE | |
Retrocopy | LGEHLYIMVKAKFEEGSEESVADEEEENSDNDME<TITKFRFVPSDKSALEATFAAMCECQYLHPDAEDE |
Parental | DSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAEGQA-TLERLEGMLSQSVSSQYNMAGVRTEDSV |
DSD.YDGEEYDVEA.EQG.GDIPTFYTYEEG.......G....L.RLEG.LSQSVS.QY.MAGVRTEDS. | |
Retrocopy | DSDAYDGEEYDVEAQEQGRGDIPTFYTYEEGFISSNSRGPS<PLWRLEGTLSQSVSCQYHMAGVRTEDSI |
Parental | RDYEDGMEVDTTPTVAGQFEDADVDH |
RD.E.GME.DTTPTVAGQFEDADVDH | |
Retrocopy | RDDEAGMEADTTPTVAGQFEDADVDH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019930 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004900 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000014927 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005260 | 1 retrocopy | |
Felis catus | ENSFCAG00000026321 | 1 retrocopy | |
Homo sapiens | ENSG00000074201 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003091 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005935 | 4 retrocopies | |
Mus musculus | ENSMUSG00000025439 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016699 | 2 retrocopies |
retro_nleu_300, retro_nleu_756 ,
|
Oryctolagus cuniculus | ENSOCUG00000024393 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003712 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009460 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027980 | 3 retrocopies |