RetrogeneDB ID:

retro_nleu_851

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397275.1:3122853..3123148(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000010330
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:HMGN3
Ensembl ID:ENSNLEG00000012377
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_851
ATGCAGAAGAGAAAGTCTCCAGAGAATACAGAGGGCAAAGATGGCTCCAAAGTAACTAAACAGGAGCCCACAAGATGGTC
TCCCAGATTGTCAGCAAAACCTCCTCCACCAAAACCTGGACCCAAACCAAGAAAAACATCTGCTAAGAAAGAACCTGGAG
CAAAGGTTAGCAGAGGTGCTAAAGAGAAGAAAGGAAAAGTAGGAAGCTGGAAAGGAAGGTACTGCACCATCTGAAAATGA
TGAAACTAAAGCTGAAGAGGCACAGAAAACTGAATCTGTAGATAACTAGGGAGAA

ORF - retro_nleu_851 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72. %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPPPPKP-EPKPRKTSAKKEPGAKISRGAKGKKEEKQE
M.KRKSPENTEGKDGSKVTKQEPTR.S.RLSAKPPPPKP..P...K....K..........K..KE.K.E
RetrocopyMQKRKSPENTEGKDGSKVTKQEPTRWSPRLSAKPPPPKP>DPNQEKHLLRKNLEQRLAEVLKRRKE-K*E
ParentalAGKEGTAPSENGETKAEEAQKTESVDNKGE
AGKEGTAPSEN.ETKAEEAQKTESVDN.GE
RetrocopyAGKEGTAPSENDETKAEEAQKTESVDN*GE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_851 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 20 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000070151 retrocopy
Cavia porcellus ENSCPOG000000124072 retrocopies
Felis catus ENSFCAG000000287931 retrocopy
Homo sapiens ENSG000001184181 retrocopy
Gorilla gorilla ENSGGOG000000069101 retrocopy
Macaca mulatta ENSMMUG000000043511 retrocopy
Nomascus leucogenys ENSNLEG00000012377 2 retrocopies
retro_nleu_68, retro_nleu_851 ,
Otolemur garnettii ENSOGAG000000164871 retrocopy
Ochotona princeps ENSOPRG000000096111 retrocopy
Pan troglodytes ENSPTRG000000183662 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000143531 retrocopy
Tupaia belangeri ENSTBEG000000154683 retrocopies
Tarsius syrichta ENSTSYG000000052383 retrocopies



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