RetrogeneDB ID: | retro_tsyr_1569 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_493329:566..772(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN3 | ||
Ensembl ID: | ENSTSYG00000005238 | ||
Aliases: | None | ||
Description: | high mobility group nucleosomal binding domain 3 [Source:HGNC Symbol;Acc:12312] |
Percent Identity: | 70.42 % |
Parental protein coverage: | 74.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SPENPEGK-DGSKVTKQEPTRRSARLSAKLDPPKPEPKPRKISAKKEPEAKINRAAKGKKEEKLEAGKEG |
SP.N.EGK.DGSKVTKQEP.RR.ARL.AK..PPKPEP.....SAKKE..AKINR..K..KEE..EAGKEG | |
Retrocopy | SPKNTEGK<DGSKVTKQEPQRRFARLLAKPAPPKPEPNXXXXSAKKESGAKINRDVK-RKEELQEAGKEG |
Parental | T |
T | |
Retrocopy | T |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007015 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012407 | 2 retrocopies | |
Felis catus | ENSFCAG00000028793 | 1 retrocopy | |
Homo sapiens | ENSG00000118418 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006910 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004351 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012377 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000016487 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009611 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018366 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014353 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015468 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005238 | 3 retrocopies |
retro_tsyr_1569 , retro_tsyr_268, retro_tsyr_976,
|