Parental gene:

HMGN3, ENSG00000118418

Aliases:HMGN3, PNAS-25, TRIP7
Description:high mobility group nucleosomal binding domain 3 [Source:HGNC Symbol;Acc:12312]
Organism:Human (Homo sapiens)
Coordinates:6:79910961..79944406(-)


>ENSG00000118418
ATGCCGAAGAGAAAGTCTCCAGAGAATACAGAGGGCAAAGATGGATCCAAAGTAACTAAACAGGAGCCCACAAGACGGTC
TGCCAGATTGTCAGCGAAACCTGCTCCACCAAAACCTGAACCCAAACCAAGAAAAACATCTGCTAAGAAAGAACCTGGAG
CAAAGATTAGCAGAGGTGCTAAAGGGAAGAAGGAGGAAAAGCAGGAAGCTGGAAAGGAAGGTACTGCACCATCTGAAAAT
GGTGAAACTAAAGCTGAAGAGGCACAGAAAACTGAATCTGTAGATAACGAGGGAGAATGA

Library Parental gene expression (RPM)
bodymap2_liver 21 .44 RPM
bodymap2_lung 41 .95 RPM
bodymap2_breast 51 .28 RPM
bodymap2_adipose 17 .69 RPM
bodymap2_adrenal 43 .64 RPM
bodymap2_skeletal_muscle 14 .15 RPM
bodymap2_thyroid 57 .38 RPM
bodymap2_prostate 53 .28 RPM
bodymap2_colon 41 .61 RPM
bodymap2_testis 67 .59 RPM
bodymap2_brain 44 .44 RPM
bodymap2_heart 76 .26 RPM
bodymap2_white_blood_cells 29 .67 RPM
bodymap2_lymph_node 45 .48 RPM
bodymap2_ovary 66 .97 RPM
bodymap2_kidney 83 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007015 ortholog_one2one 1 retrogene
retro_chof_2241,
Cavia porcellus ENSCPOG00000012407 ortholog_one2one 2 retrogenes
retro_cpor_1399, retro_cpor_147,
Felis catus ENSFCAG00000028793 ortholog_one2one 1 retrogene
retro_fcat_1400,
Gorilla gorilla ENSGGOG00000006910 ortholog_one2one 1 retrogene
retro_ggor_293,
Macaca mulatta ENSMMUG00000004351 ortholog_one2one 1 retrogene
retro_mmul_414,
Nomascus leucogenys ENSNLEG00000012377 ortholog_one2one 2 retrogenes
retro_nleu_68, retro_nleu_851,
Otolemur garnettii ENSOGAG00000016487 possible_ortholog 1 retrogene
retro_ogar_190,
Ochotona princeps ENSOPRG00000009611 ortholog_one2one 1 retrogene
retro_opri_799,
Pan troglodytes ENSPTRG00000018366 ortholog_one2one 2 retrogenes
retro_ptro_1427, retro_ptro_200,
Ictidomys tridecemlineatus ENSSTOG00000014353 ortholog_one2one 1 retrogene
retro_itri_251,
Tupaia belangeri ENSTBEG00000015468 ortholog_one2one 3 retrogenes
retro_tbel_1912, retro_tbel_4714, retro_tbel_615,
Tarsius syrichta ENSTSYG00000005238 ortholog_one2one 3 retrogenes
retro_tsyr_1569, retro_tsyr_268, retro_tsyr_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_231 69.00 100.00
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Download FASTA sequences of all ENSG00000118418 retrocopies