RetrogeneDB ID: | retro_nleu_856 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397275.1:13659410..13660140(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRNT1 | ||
Ensembl ID: | ENSNLEG00000003226 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.85 % |
Parental protein coverage: | 55.99 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 2 |
Parental | NKKVRFVGHAKQRIQEDYLRILR--YFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKI |
NKK......A.......Y...L......FYG.IV...GDHDPETL..IAENAK.L.GISG.RIWVELKK. | |
Retrocopy | NKKLKSYHLAQVELSS*YSSQLS*TFLHFYGTIVEETGDHDPETL*TIAENAKRLGGISGMRIWVELKKC |
Parental | L-VGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVEGFSPKPMTLLASLFKVQDDVTKLDLRLK |
L.VGNHVNHLI.LI.DLDVAPY..L.AN.SLEEF.KV.KNVEGFSPK.MTL.ASLFK..DDV.K.DLR.. | |
Retrocopy | L<VGNHVNHLIPLICDLDVAPYVDLSAN*SLEEFNKVRKNVEGFSPKSMTLFASLFK**DDVAKVDLRST |
Parental | IAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIP |
.A..EK.LGLF.VKNRKDLIKATDSS.PLK.YQDFI..SRE.DATT.VCELL.Y.GEHCL.KEMQQ..I. | |
Retrocopy | TAQKEKSLGLFMVKNRKDLIKATDSSEPLKLYQDFITASREHDATTCVCELLRYPGEHCL*KEMQQRRI- |
Parental | PFPV-SGHDIRKVGISSGKEIGALLQQLREQWKKSGY |
PFPV...HDIRKVGISSGKEIGALLQQL.EQW.KSG. | |
Retrocopy | PFPV<NCHDIRKVGISSGKEIGALLQQL*EQWEKSGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015466 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008837 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018177 | 2 retrocopies | |
Homo sapiens | ENSG00000072756 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015286 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003226 | 1 retrocopy |
retro_nleu_856 ,
|
Petromyzon marinus | ENSPMAG00000002236 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013702 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000014564 | 1 retrocopy |