RetrogeneDB ID: | retro_pabe_412 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:88095366..88096021(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRNT1 | ||
Ensembl ID: | ENSPPYG00000013702 | ||
Aliases: | None | ||
Description: | tRNA nucleotidyl transferase, CCA-adding, 1 [Source:HGNC Symbol;Acc:17341] |
Percent Identity: | 76.13 % |
Parental protein coverage: | 50.69 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | YFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKIL-VGNHVNHLIHLIYDLDVAPYIGL |
...FYG.IV..PGDH.PETL..IAENAK.L.GISG.RIWVELKK.L.VGNHVNHLI.LI.DLDVAPY.GL | |
Retrocopy | FLHFYGTIVEQPGDHGPETL*TIAENAKRLGGISGIRIWVELKKFL<VGNHVNHLISLICDLDVAPYVGL |
Parental | PANASLEEFDKVSKNVEGFSPKPMTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNKKDLIKATDS |
....SLEEF.KVSKNVEGFSPK.MTL.ASLFK..DDV.K.DLR.K.A..EK..GLF.VKN.KDLIKATDS | |
Retrocopy | SSD*SLEEFNKVSKNVEGFSPKSMTLFASLFK**DDVAKVDLRSKTAQKEKSPGLFMVKNRKDLIKATDS |
Parental | SEPLKPYQDFIIDSREPDAPTRVCELLKYQGEHCLLKEMQQWSIPPFPV-SGHDIRKVGISSGKEIGALL |
SEPLK.YQDFII.SRE.DA.TRVCELL.YQ.EHCL.KEMQQ..I.PFPV...HDIRKVG.SSGKEIGALL | |
Retrocopy | SEPLKLYQDFIIGSREHDATTRVCELLRYQEEHCL*KEMQQR*I-PFPV<NCHDIRKVGMSSGKEIGALL |
Parental | QQLREQWKKSGY |
QQL.EQW.KSG. | |
Retrocopy | QQLGEQWEKSGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .92 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .11 RPM |
SRP007412_heart | 0 .00 RPM | 2 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .67 RPM |
SRP007412_liver | 0 .00 RPM | 2 .72 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_246 |
Gorilla gorilla | retro_ggor_300 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015466 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008837 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018177 | 2 retrocopies | |
Homo sapiens | ENSG00000072756 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015286 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003226 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000002236 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013702 | 3 retrocopies |
retro_pabe_1916, retro_pabe_2721, retro_pabe_412 ,
|
Pan troglodytes | ENSPTRG00000014564 | 1 retrocopy |