RetrogeneDB ID: | retro_pabe_2721 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:16402869..16404172(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRNT1 | ||
Ensembl ID: | ENSPPYG00000013702 | ||
Aliases: | None | ||
Description: | tRNA nucleotidyl transferase, CCA-adding, 1 [Source:HGNC Symbol;Acc:17341] |
Percent Identity: | 97.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MLRCLYHWHRPVLNCRWSRLCLLKRYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLL |
MLRCLYHWHRPVLNCRWSRLCLLKRYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLL | |
Retrocopy | MLRCLYHWHRPVLNCRWSRLCLLKRYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLL |
Parental | NGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEF |
NGVKPQDIDFATTATPT.MKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEV.F | |
Retrocopy | NGVKPQDIDFATTATPT*MKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVAF |
Parental | TTDWQKDAERRDLTI-NSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIV |
TTD.QKD.E.RDLTI.N.MFLGFDGTLF.YFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIV | |
Retrocopy | TTDRQKDVECRDLTI>NCMFLGFDGTLFHYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIV |
Parental | DKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFD |
DKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVA.YIGLPANASLEEFD | |
Retrocopy | DKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVASYIGLPANASLEEFD |
Parental | KVSKNVEGFSPKPMTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNKKDLIKATDSSEPLKPYQDF |
KVSKNVEGFSPKPMTLLASLFKVQDDVTKLDLRLKI.KEEKNLGLFIVKNKKDLIKATDSS.PLKPYQDF | |
Retrocopy | KVSKNVEGFSPKPMTLLASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNKKDLIKATDSSDPLKPYQDF |
Parental | IIDSREPDAPTRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSG |
IIDSREPDAPTRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSG | |
Retrocopy | IIDSREPDAPTRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSG |
Parental | YQMEKDELLSYIKKT |
YQMEKDELL.YIKKT | |
Retrocopy | YQMEKDELLNYIKKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 4 .92 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .11 RPM |
SRP007412_heart | 0 .03 RPM | 2 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .67 RPM |
SRP007412_liver | 0 .06 RPM | 2 .72 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015466 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008837 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018177 | 2 retrocopies | |
Homo sapiens | ENSG00000072756 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015286 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003226 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000002236 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013702 | 3 retrocopies |
retro_pabe_1916, retro_pabe_2721 , retro_pabe_412,
|
Pan troglodytes | ENSPTRG00000014564 | 1 retrocopy |