RetrogeneDB ID: | retro_ocun_287 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:53536626..53537019(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN4 | ||
Ensembl ID: | ENSOCUG00000004940 | ||
Aliases: | None | ||
Description: | prefoldin subunit 4 [Source:HGNC Symbol;Acc:8868] |
Percent Identity: | 89.39 % |
Parental protein coverage: | 98.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAATMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLAEDDCLMIPYQ |
MAATMKKAAAEDVN.TF.D.QKINK..RN.SRITELKEEIEVKKKQL.NLEDACDDIMLA.DDCLMIPYQ | |
Retrocopy | MAATMKKAAAEDVNTTFQD*QKINKVSRNMSRITELKEEIEVKKKQL*NLEDACDDIMLA-DDCLMIPYQ |
Parental | IGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEAD |
.GD.FIS.SQEETQEMLEEAKKNL.EE.DALESRVESIQR.LADLKVQLYAKFGSNINLEAD | |
Retrocopy | TGDAFISPSQEETQEMLEEAKKNLHEETDALESRVESIQRMLADLKVQLYAKFGSNINLEAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .30 RPM |
SRP017611_liver | 0 .00 RPM | 1 .39 RPM |