RetrogeneDB ID: | retro_cpor_1428 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_80:2884840..2885207(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN4 | ||
Ensembl ID: | ENSCPOG00000012478 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.8 % |
Parental protein coverage: | 91.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQE |
D.....E.QQKI.KFA.N.SRI.ELKE..E.KKKQLQNLE.A....MLA.DDCLM...QI.DVFI.HSQ. | |
Retrocopy | DCRCYLEVQQKIYKFAQNMSRIAELKEI*EIKKKQLQNLEVAHNNNMLAEDDCLMRSSQISDVFIDHSQK |
Parental | ETQEMLEEA-KKNLQEEIDALESRVASIQRVLADLKVQLYAKFGS-NINLEADES |
E.QE.L.E..KKNLQ.EID.LESR...IQ.VLA.LKVQL.AK.G..NI..EA.ES | |
Retrocopy | EAQEILQEI<KKNLQKEIDTLESRGE*IQQVLAGLKVQLPAKLGT<NITIEAAES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .71 RPM |
SRP017611_liver | 0 .00 RPM | 4 .61 RPM |
SRP040447_lung | 0 .00 RPM | 4 .69 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 5 .85 RPM |