RetrogeneDB ID: | retro_ocun_834 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:53124248..53124887(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAP1L1 | ||
Ensembl ID: | ENSOCUG00000013857 | ||
Aliases: | None | ||
Description: | nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637] |
Percent Identity: | 73.39 % |
Parental protein coverage: | 54.99 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | NVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEF-HFEPNEYFTNEVLTKTYRMRSEPDDSDPF |
NV.LLSDMVQEH.EPILKHL.DIKVKF.DAGQP....L.F.HFEPNEYFTNEV..KTYRMRSEP.DSD.F | |
Retrocopy | NVGLLSDMVQEHGEPILKHLTDIKVKFYDAGQPVKLALAF<HFEPNEYFTNEVFIKTYRMRSEPEDSDLF |
Parental | SFDGPEIMGCTGCQIDWKKGKNVTLK-TIKKKQKHKGRGTVRTVTKTVSNDSFFNF-FAPPEVPESGDLD |
SFD..EIMGC...Q.D..K.KNV.LK.T.KKKQKHK..GTV.TVTKT.SND...NF.FAPPEVPESGDLD | |
Retrocopy | SFD*SEIMGCMMWQTDLEKEKNVILK<TVKKKQKHK*SGTVCTVTKTGSNDT-ANF<FAPPEVPESGDLD |
Parental | DDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQ |
D.AEAILAADFEIGHFL.E.IIPRSVLYFTGEAIED.DDD...................NDPDYDPKKDQ | |
Retrocopy | DAAEAILAADFEIGHFLHECIIPRSVLYFTGEAIEDNDDDXXXXXXXXXXXXXXXXXXXNDPDYDPKKDQ |
Parental | NPAECKQQ |
NPAECK.Q | |
Retrocopy | NPAECKWQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 135 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 66 .08 RPM |
SRP017611_liver | 0 .00 RPM | 36 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020908 | 8 retrocopies | |
Macropus eugenii | ENSMEUG00000013702 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015583 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020456 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000017474 | 1 retrocopy | |
Mus musculus | ENSMUSG00000058799 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005624 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013857 | 1 retrocopy |
retro_ocun_834 ,
|
Rattus norvegicus | ENSRNOG00000003890 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000017062 | 2 retrocopies |