RetrogeneDB ID: | retro_btau_474 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 12:58979630..58980606(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000021503 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAP1L1 | ||
Ensembl ID: | ENSBTAG00000020908 | ||
Aliases: | None | ||
Description: | Nucleosome assembly protein 1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:A6H767] |
Percent Identity: | 85.28 % |
Parental protein coverage: | 83.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKP |
I..LPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDK.FEIINAIYEPTEEECEWKP | |
Retrocopy | IDNLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKQFEIINAIYEPTEEECEWKP |
Parental | DEEDEISEELKEKAKVEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDA |
DEEDEISEEL.................PKGIPEFWL.VFKNVDLLSDMVQEHDEPILKHLKDI.VKFSDA | |
Retrocopy | DEEDEISEELXXXXXXXXXXXXXXXXXPKGIPEFWLIVFKNVDLLSDMVQEHDEPILKHLKDIEVKFSDA |
Parental | GQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKK |
GQPMSFVLE.HFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGP.IMGCTGCQIDWKKGKNVTLKTIKKK | |
Retrocopy | GQPMSFVLELHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPVIMGCTGCQIDWKKGKNVTLKTIKKK |
Parental | QKHKGRGTVRTVTKTVSNDSFF-NFFAPPEVPESGDLDDDSEAILAADFEIGHFLRERIIPRSVLYFTGE |
QKHKGRGTV.TVTKTVSNDSFF....APPEVPESGDLDDDSEAILAADFEIGHFLRERIIPRSVLYFTGE | |
Retrocopy | QKHKGRGTVCTVTKTVSNDSFF>XXXAPPEVPESGDLDDDSEAILAADFEIGHFLRERIIPRSVLYFTGE |
Parental | AIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ |
AIEDDDDD...................NDPDYDPKKDQNPAECKQQ | |
Retrocopy | AIEDDDDDXXXXXXXXXXXXXXXXXXXNDPDYDPKKDQNPAECKQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 23 .14 RPM |
ERP005899_muscle | 0 .63 RPM | 187 .24 RPM |
SRP017611_brain | 1 .51 RPM | 93 .19 RPM |
SRP017611_kidney | 0 .53 RPM | 64 .37 RPM |
SRP017611_liver | 0 .23 RPM | 26 .05 RPM |
SRP030211_testis | 0 .44 RPM | 113 .21 RPM |