RetrogeneDB ID: | retro_meug_1031 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold2637:50261..51107(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAP1L1 | ||
Ensembl ID: | ENSMEUG00000013702 | ||
Aliases: | None | ||
Description: | nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637] |
Percent Identity: | 80.21 % |
Parental protein coverage: | 72.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LPKVVKRHVNALKNLQVKCAHIEAK-FYEEVHALERKYAVLYQPLFDKRSEIIN-AVYEPTEEECEWKPD |
LPKVVKR.VNALKNLQVKC..IEAK..YEEVHALERKY.VLYQ.LFDKRSEIIN...YEP.EEECEWKPD | |
Retrocopy | LPKVVKRRVNALKNLQVKCVQIEAK<VYEEVHALERKYVVLYQLLFDKRSEIIN<SIYEPEEEECEWKPD |
Parental | DDEEISEEMKEKAKLEEEKKDEEKEDPKGIPEFWLIIFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAG |
DD.E.SE.MKEKAKLEE.KKDEEKE.PKGIPEF....FKNVDL.SDM.Q.HDEPILKHLKDIKVK.SDAG | |
Retrocopy | DDKELSE-MKEKAKLEEDKKDEEKEEPKGIPEF*PTVFKNVDLHSDMDQGHDEPILKHLKDIKVKVSDAG |
Parental | QPMSFTLEFHFESNEYFTNEMLTKTYRMRSEPDDSDPFSFDGPEIMSCTGCQVDWKK-GKNVTLKTIKKK |
Q..SF.LEFHFE.N.YFTNE...KTYRM.SEPDDSD.FSFDGPEIMSCT.CQVDWKK.GK...LKTIKKK | |
Retrocopy | QLTSFALEFHFEPNVYFTNEVFIKTYRMWSEPDDSDSFSFDGPEIMSCTECQVDWKK>GK-MSLKTIKKK |
Parental | QKHKGRGTVRTVTKTVSNDSFFNFFSPPEXXXXXXXDDDAEAILAADFEIGH-FLRERIVPRSVLYFTGE |
QKHKGR.TV.TV.KTVSNDSFFNFFSPPE.......DDD.EAIL.ADFEI.H.FL.E.IVPRSVLYFTGE | |
Retrocopy | QKHKGRETVQTVIKTVSNDSFFNFFSPPEVPEGGDLDDDVEAILVADFEIRH>FLCELIVPRSVLYFTGE |
Parental | AIEDDDDD |
AIED.D.D | |
Retrocopy | AIEDNDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |