Parental gene:

Nap1l1, ENSRNOG00000003890

Aliases:None
Description:nucleosome assembly protein 1-like 1 [Source:RefSeq peptide;Acc:NP_446013]
Organism:Rat (Rattus norvegicus)
Coordinates:7:54238051..54261360(+)


>ENSRNOG00000003890
ATGGCAGACATTGACAACAAAGAACAGTCTGAACTTGATCAAGATTTGGAAGATGTTGAAGAAGTAGAAGAAGAAGAAAC
GGGTGAAGAAACAAAAATCAAAGCACGTCAGCTAACTGTTCAGATGATGCAAAATCCTCAGATTCTTGCAGCTCTTCAGG
AAAGACTTGATGGTCTGGTAGACACACCAACAGGATACATTGAAAGCTTGCCTAAGGTAGTCAAAAGACGGGTGAATGCT
CTCAAGAATCTTCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCATGACCTTGAGAGAAAGTATGC
TGTTCTCTATCAGCCTCTGTTTGATAAGCGATTTGAGATCATTAATGCAATTTATGAACCTACAGAAGAAGAATGTGAAT
GGAAACCAGATGAGGAAGATGAAGTTTCGGAGGAGCTGAAAGAAAAGGCCAAGATTGAAGATGAGAAAAAGGATGAAGAA
AAAGAAGACCCTAAAGGAATTCCTGAGTTTTGGTTGACAGTTTTTAAGAATGTTGATTTGCTCAGTGATATGGTTCAGGA
ACATGACGAACCTATTCTGAAGCACTTGAAAGATATTAAAGTGAAGTTTTCGGACGCTGGCCAGCCTATGAGTTTTATCT
TAGAATTTCACTTTGAACCCAACGAATATTTCACAAATGAAGTGTTAACAAAGACTTACAGGATGAGGTCAGAACCAGAT
GATTCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTGCCAGATAGATTGGAAAAAAGGAAAGAA
TGTTACTTTGAAAACCATTAAGAAGAAGCAGAAACACAAGGGCCGTGGGACAGTTCGTACTGTGACTAAAACAGTTTCCA
ATGATTCTTTCTTTAACTTTTTTGCTCCTCCTGAAGTTCCTGAGAATGGAGATCTGGATGACGATGCTGAGGCAATACTG
GCTGCAGACTTTGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTATACTTCACTGGAGAAGCTAT
TGAGGACGATGACGATGACTATGATGAAGAAGGTGAAGAAGCTGATGAGGAAGGGGAAGAAGAAGGAGATGAGGAAAACG
ATCCAGACTATGACCCAAAGAAGGATCAAAACCCAGCCGAGTGCAAGCAGCAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 155 .22 RPM
SRP017611_kidney 92 .25 RPM
SRP017611_liver 30 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020908 possible_ortholog 8 retrogenes
retro_btau_1319, retro_btau_1324, retro_btau_1462, retro_btau_1487, retro_btau_474, retro_btau_652, retro_btau_70, retro_btau_935,
Choloepus hoffmanni ENSCHOG00000003210 possible_ortholog 2 retrogenes
retro_chof_1095, retro_chof_2057,
Callithrix jacchus ENSCJAG00000001115 possible_ortholog 1 retrogene
retro_cjac_534,
Felis catus ENSFCAG00000000279 possible_ortholog 1 retrogene
retro_fcat_1037,
Homo sapiens ENSG00000187109 possible_ortholog 3 retrogenes
retro_hsap_1199, retro_hsap_2696, retro_hsap_833,
Gorilla gorilla ENSGGOG00000003883 possible_ortholog 3 retrogenes
retro_ggor_1879, retro_ggor_686, retro_ggor_934,
Macropus eugenii ENSMEUG00000013702 ortholog_one2many 2 retrogenes
retro_meug_1031, retro_meug_604,
Macaca mulatta ENSMMUG00000015583 possible_ortholog 1 retrogene
retro_mmul_233,
Monodelphis domestica ENSMODG00000020456 ortholog_many2many 4 retrogenes
retro_mdom_1476, retro_mdom_1638, retro_mdom_520, retro_mdom_724,
Mustela putorius furo ENSMPUG00000017474 possible_ortholog 1 retrogene
retro_mputfur_505,
Mus musculus ENSMUSG00000058799 ortholog_one2many 1 retrogene
retro_mmus_263,
Nomascus leucogenys ENSNLEG00000004682 possible_ortholog 4 retrogenes
retro_nleu_1192, retro_nleu_2085, retro_nleu_265, retro_nleu_2766,
Oryctolagus cuniculus ENSOCUG00000013857 possible_ortholog 1 retrogene
retro_ocun_834,
Otolemur garnettii ENSOGAG00000010319 possible_ortholog 4 retrogenes
retro_ogar_1278, retro_ogar_1281, retro_ogar_3357, retro_ogar_666,
Pongo abelii ENSPPYG00000004786 possible_ortholog 2 retrogenes
retro_pabe_2287, retro_pabe_999,
Pan troglodytes ENSPTRG00000005240 possible_ortholog 4 retrogenes
retro_ptro_1820, retro_ptro_582, retro_ptro_694, retro_ptro_819,
Pteropus vampyrus ENSPVAG00000016032 possible_ortholog 2 retrogenes
retro_pvam_1282, retro_pvam_306,
Ictidomys tridecemlineatus ENSSTOG00000003046 possible_ortholog 2 retrogenes
retro_itri_1007, retro_itri_416,
Tursiops truncatus ENSTTRG00000017062 possible_ortholog 2 retrogenes
retro_ttru_160, retro_ttru_1921,
Vicugna pacos ENSVPAG00000007290 possible_ortholog 3 retrogenes
retro_vpac_435, retro_vpac_441, retro_vpac_601,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_150 91.76 92.84
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Download FASTA sequences of all ENSRNOG00000003890 retrocopies