RetrogeneDB ID: retro_ogar_46

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873693.1:850860..851346(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000026807
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000013918
• Aliases: None
• Description: None

Sequence

>retro_ogar_46
ATGAAAGAAACTATCATGAACCAAGAGAAACTCGCCAAACTGCAGGCACAAGTGCACAGTGGTGGGAAAGGAACTGCTCG
CAGAAAGAAGAAGGTGGTTCATAGAACAGCTGCAGCAGATGATAAAAAACTTCAGTTCTCCTTAAGGAAAATAGGGGTAA
ACAATATCTCTGGTATCAAAGAGGTGAATATGTTTACAAACCAAGGAACAGTGATCCACTTTAACAACCCTAAAGTTCAG
GCATCTCTGGCAGCAAACACTATCACCATTACAGGCCATGCTGAGACCAAGCAGCTGACAGAAATGCTACCCAGCATCTT
AAACCAGCTTGGTGCAGACAGTCTGACTAGCTGGAGGAGGCAGGCTGAAGCTCTGCCTGAACAATCTGTGGATGGAAAAG
CACCACTTGCTACTGGAGAGGATGATGATGGTGAAGTTCTAGATCTTGTGCAGAGTTTTGATGAGGCTCCAAGAATGAGG
CAAACT

Alignment

ORF - retro_ogar_46 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.12 %
• Parental protein coverage: 76.81 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MKETIMNQEKLAKLQAQVRIGGKGLTFQRDKSKDFTVLTA-KNIKFNKFKVPGGALNLSEAIKVNMFTNQ
          MKETIMNQEKLAKLQAQV..GGKG......K....T.....K...F...K...G..N.S....VNMFTNQ
Retrocopy MKETIMNQEKLAKLQAQVHSGGKGTARRKKKVVHRTAAADDKKLQFSLRKI--GVNNISGIKEVNMFTNQ

Parental  GTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLAT
          GTVIHFNNPKVQASLAANT.TITGHAETKQLTEMLPSILNQLGADSLTS.RR.AEALP.QSVDGKAPLAT
Retrocopy GTVIHFNNPKVQASLAANTITITGHAETKQLTEMLPSILNQLGADSLTSWRRQAEALPEQSVDGKAPLAT

Parental  GEDDDDEVPDLVENFDEASK
          GEDDD.EV.DLV..FDEA..
Retrocopy GEDDDGEVLDLVQSFDEAPR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_46 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 37 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000010012	5 retrocopies	retro_btau_1161, retro_btau_1344, retro_btau_1361, retro_btau_459, retro_btau_551,
Canis familiaris	ENSCAFG00000008212	3 retrocopies	retro_cfam_1660, retro_cfam_1741, retro_cfam_531,
Callithrix jacchus	ENSCJAG00000016600	4 retrocopies	retro_cjac_1454, retro_cjac_1673, retro_cjac_2640, retro_cjac_281,
Ciona savignyi	ENSCSAVG00000009653	1 retrocopy	retro_csav_25,
Dipodomys ordii	ENSDORG00000014031	5 retrocopies	retro_dord_287, retro_dord_341, retro_dord_422, retro_dord_54, retro_dord_66,
Equus caballus	ENSECAG00000021629	1 retrocopy	retro_ecab_200,
Microcebus murinus	ENSMICG00000017182	3 retrocopies	retro_mmur_1219, retro_mmur_1301, retro_mmur_651,
Monodelphis domestica	ENSMODG00000001762	3 retrocopies	retro_mdom_189, retro_mdom_454, retro_mdom_931,
Nomascus leucogenys	ENSNLEG00000004718	9 retrocopies	retro_nleu_1081, retro_nleu_1199, retro_nleu_1284, retro_nleu_1446, retro_nleu_1797, retro_nleu_2526, retro_nleu_451, retro_nleu_496, retro_nleu_734,
Otolemur garnettii	ENSOGAG00000013918	1 retrocopy	retro_ogar_46 ,
Otolemur garnettii	ENSOGAG00000030256	2 retrocopies	retro_ogar_2759, retro_ogar_570,