Parental gene:

ENSCJAG00000016600

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:134939585..134947303(-)


>ENSCJAG00000016600
ATGCGACGGACAGGCGCACCCGCTCAGGCTGACTCTCGGGGGCGAGGTCGAGCCAGGGGCGGCTGCCCTGGGGGCGAGGC
GACGCTGTCTCTACCTCCACCTCCCGGCGGAACCCGAGGACAGGAGCCTCAGATGAAAGAAACAATCATGAACCAGGAAA
AACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCGCAGAAAGAAGAAGGTGGTTCATAGAACA
GCTACAGCAGATGATAAAAAACTTCAGTTCTCCTTAAAGAAGTTAGGGGTGAACAATATCTCTGGTATTGAAGAGGTGAA
TATGTTTACAAACCAAGGAACAGTGATCCACTTTAACAACCCTAAAGTTCAGGCATCTCTGGCAGCGAACACTTTCACCA
TTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGCTACCCAGCATCTTAAACCAGCTTGGGGCAGACAGTCTGACC
AGTTTAAGGAGACTGGCTGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAGCACCGCTTGCTACTGGAGAGGAGGATGA
TGATGAAGTTCCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAGGCAAACTGA

Library Parental gene expression (RPM)
SRP051959_colon 23 .47 RPM
SRP051959_heart 21 .87 RPM
SRP051959_kidney 20 .61 RPM
SRP051959_liver 26 .34 RPM
SRP051959_lung 22 .43 RPM
SRP051959_lymph_node 24 .86 RPM
SRP051959_skeletal_muscle 32 .74 RPM
SRP051959_spleen 28 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011563 possible_ortholog 14 retrogenes
retro_amel_1257, retro_amel_1279, retro_amel_1324, retro_amel_1334, retro_amel_1433, retro_amel_166, retro_amel_1769, retro_amel_182, retro_amel_1841, retro_amel_480, retro_amel_513, retro_amel_784, retro_amel_908, retro_amel_986,
Bos taurus ENSBTAG00000010012 ortholog_one2many 5 retrogenes
retro_btau_1161, retro_btau_1344, retro_btau_1361, retro_btau_459, retro_btau_551,
Canis familiaris ENSCAFG00000008212 possible_ortholog 3 retrogenes
retro_cfam_1660, retro_cfam_1741, retro_cfam_531,
Choloepus hoffmanni ENSCHOG00000001861 possible_ortholog 13 retrogenes
retro_chof_1027, retro_chof_1166, retro_chof_117, retro_chof_1397, retro_chof_1406, retro_chof_1884, retro_chof_1960, retro_chof_2194, retro_chof_2682, retro_chof_2703, retro_chof_344, retro_chof_364, retro_chof_700,
Callithrix jacchus ENSCJAG00000021582 within_species_paralog 4 retrogenes
retro_cjac_2000, retro_cjac_2929, retro_cjac_4160, retro_cjac_451,
Cavia porcellus ENSCPOG00000012832 possible_ortholog 1 retrogene
retro_cpor_81,
Ciona savignyi ENSCSAVG00000009653 ortholog_one2many 1 retrogene
retro_csav_25,
Dasypus novemcinctus ENSDNOG00000018682 possible_ortholog 4 retrogenes
retro_dnov_1958, retro_dnov_2107, retro_dnov_497, retro_dnov_817,
Dipodomys ordii ENSDORG00000014031 possible_ortholog 5 retrogenes
retro_dord_287, retro_dord_341, retro_dord_422, retro_dord_54, retro_dord_66,
Equus caballus ENSECAG00000021629 ortholog_one2many 1 retrogene
retro_ecab_200,
Echinops telfairi ENSETEG00000017341 possible_ortholog 5 retrogenes
retro_etel_1216, retro_etel_1394, retro_etel_1997, retro_etel_405, retro_etel_960,
Felis catus ENSFCAG00000023973 possible_ortholog 10 retrogenes
retro_fcat_1044, retro_fcat_1378, retro_fcat_1438, retro_fcat_187, retro_fcat_188, retro_fcat_225, retro_fcat_28, retro_fcat_419, retro_fcat_593, retro_fcat_919,
Homo sapiens ENSG00000145741 possible_ortholog 11 retrogenes
retro_hsap_1215, retro_hsap_1396, retro_hsap_2259, retro_hsap_2525, retro_hsap_2819, retro_hsap_2964, retro_hsap_3533, retro_hsap_3551, retro_hsap_3972, retro_hsap_4270, retro_hsap_625,
Gorilla gorilla ENSGGOG00000000166 possible_ortholog 10 retrogenes
retro_ggor_1082, retro_ggor_1682, retro_ggor_1961, retro_ggor_2054, retro_ggor_2399, retro_ggor_2647, retro_ggor_2667, retro_ggor_548, retro_ggor_81, retro_ggor_946,
Microcebus murinus ENSMICG00000017182 possible_ortholog 3 retrogenes
retro_mmur_1219, retro_mmur_1301, retro_mmur_651,
Myotis lucifugus ENSMLUG00000012912 possible_ortholog 11 retrogenes
retro_mluc_1024, retro_mluc_1349, retro_mluc_1459, retro_mluc_1748, retro_mluc_1820, retro_mluc_1823, retro_mluc_2560, retro_mluc_2602, retro_mluc_482, retro_mluc_682, retro_mluc_694,
Macaca mulatta ENSMMUG00000022291 possible_ortholog 2 retrogenes
retro_mmul_105, retro_mmul_2424,
Monodelphis domestica ENSMODG00000001762 possible_ortholog 3 retrogenes
retro_mdom_189, retro_mdom_454, retro_mdom_931,
Mustela putorius furo ENSMPUG00000005864 possible_ortholog 28 retrogenes
retro_mputfur_1125, retro_mputfur_1149, retro_mputfur_1267, retro_mputfur_1289, retro_mputfur_1319, retro_mputfur_1321, retro_mputfur_1386, retro_mputfur_1414, retro_mputfur_1472, retro_mputfur_1525, retro_mputfur_1548, retro_mputfur_1576, retro_mputfur_1599, retro_mputfur_246, retro_mputfur_324, retro_mputfur_392, retro_mputfur_403, retro_mputfur_431, retro_mputfur_618, retro_mputfur_661, retro_mputfur_724, retro_mputfur_728, retro_mputfur_753, retro_mputfur_760, retro_mputfur_795, retro_mputfur_901, retro_mputfur_926, retro_mputfur_972,
Mus musculus ENSMUSG00000021660 possible_ortholog 11 retrogenes
retro_mmus_1904, retro_mmus_2445, retro_mmus_2769, retro_mmus_3054, retro_mmus_3272, retro_mmus_3344, retro_mmus_3525, retro_mmus_443, retro_mmus_451, retro_mmus_470, retro_mmus_707,
Nomascus leucogenys ENSNLEG00000004718 possible_ortholog 9 retrogenes
retro_nleu_1081, retro_nleu_1199, retro_nleu_1284, retro_nleu_1446, retro_nleu_1797, retro_nleu_2526, retro_nleu_451, retro_nleu_496, retro_nleu_734,
Oryctolagus cuniculus ENSOCUG00000024914 possible_ortholog 6 retrogenes
retro_ocun_1186, retro_ocun_1299, retro_ocun_1364, retro_ocun_446, retro_ocun_857, retro_ocun_916,
Otolemur garnettii ENSOGAG00000013918 possible_ortholog 1 retrogene
retro_ogar_46,
Pongo abelii ENSPPYG00000029576 possible_ortholog 14 retrogenes
retro_pabe_1154, retro_pabe_1477, retro_pabe_180, retro_pabe_1885, retro_pabe_1956, retro_pabe_2207, retro_pabe_2458, retro_pabe_2918, retro_pabe_2919, retro_pabe_2932, retro_pabe_3329, retro_pabe_3484, retro_pabe_558, retro_pabe_649,
Pan troglodytes ENSPTRG00000016979 possible_ortholog 12 retrogenes
retro_ptro_1470, retro_ptro_1599, retro_ptro_1675, retro_ptro_1912, retro_ptro_2006, retro_ptro_2413, retro_ptro_2494, retro_ptro_2697, retro_ptro_2896, retro_ptro_455, retro_ptro_832, retro_ptro_959,
Pteropus vampyrus ENSPVAG00000007160 possible_ortholog 11 retrogenes
retro_pvam_1011, retro_pvam_241, retro_pvam_301, retro_pvam_440, retro_pvam_456, retro_pvam_515, retro_pvam_602, retro_pvam_647, retro_pvam_70, retro_pvam_882, retro_pvam_919,
Rattus norvegicus ENSRNOG00000016912 possible_ortholog 9 retrogenes
retro_rnor_187, retro_rnor_194, retro_rnor_2121, retro_rnor_2520, retro_rnor_2990, retro_rnor_2991, retro_rnor_2999, retro_rnor_836, retro_rnor_953,
Sorex araneus ENSSARG00000007736 possible_ortholog 5 retrogenes
retro_sara_195, retro_sara_279, retro_sara_354, retro_sara_427, retro_sara_74,
Tarsius syrichta ENSTSYG00000001295 possible_ortholog 7 retrogenes
retro_tsyr_1360, retro_tsyr_1388, retro_tsyr_212, retro_tsyr_707, retro_tsyr_878, retro_tsyr_90, retro_tsyr_954,
Tursiops truncatus ENSTTRG00000007290 possible_ortholog 2 retrogenes
retro_ttru_1883, retro_ttru_391,
Vicugna pacos ENSVPAG00000009607 possible_ortholog 2 retrogenes
retro_vpac_185, retro_vpac_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_281 98.35 58.74
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2. retro_cjac_1454 83.02 51.46
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3. retro_cjac_1673 85.71 100.00
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4. retro_cjac_2640 78.57 61.11
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Download FASTA sequences of all ENSCJAG00000016600 retrocopies