RetrogeneDB ID:

retro_ogar_570

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873523.1:25593657..25594146(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000031657
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:BTF3L4
Ensembl ID:ENSOGAG00000030256
Aliases:None
Description:basic transcription factor 3-like 4 [Source:HGNC Symbol;Acc:30547]


Retrocopy-Parental alignment summary:






>retro_ogar_570
TCGGAGGCAGCCATCTTGCTTTTGCCACATGCTGGTGTTGAAGGACCATCCCTGCTTCAGATTTACCAACAGCATCAATC
AGGAAAAGAGAAACTTGAGGTTCAAATAGGGGGCATAGATAGAGCTCACAGAAAGAAGGTGGTACAGAGAGCAGCTACAG
TTGATGACAAAAAGCATCAGAGTTCTCTTAAAAAACTGGCTGTGAACAATATAACTGGTATGGAAGGGATGAACGTGGTT
GAAGATGACGGGACAGTTATTCATTTCAACAATCCCAAAGTCCAAACTTCCCTCTCTGCTAACACCTTTGCAATTACTGG
TCATGTAGAAGCTAAACCAATCACAGAAATGCTTCCTGGAATATCAGGTCAGCTTGATGCTGACAACTTAGCAAACCTTA
GGAAGTTAGCTGAATAGTTCCCACAGCAAGTCTTGGACATGAAAGCACAAAACCCAGAAGACATTGATGAGGAGGAGGGT
GATGTTCCA

ORF - retro_ogar_570 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 57.14 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSEAAILLLPRAGVGGPSRFRFTNSMNQEKLAKLQAQVRIGGKNLGNREKIDSHRCHATKDRKIRSFQKKQ
SEAAILLLP.AGV.GPS.........Q....K....V.IGG.....R.K.......AT.D.K......K.
RetrocopySEAAILLLPHAGVEGPSLLQI---YQQHQSGKEKLEVQIGGIDRAHRKKVVQRA--ATVDDKKHQSSLKK
ParentalLILTDLFVIIQVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRK
L...........N...DDGTVIHFNNPKVQ.SLSANTFAITGH.EAKPITEMLPGI..QL.AD.L..LRK
RetrocopyLAVNNITGMEGMNVVEDDGTVIHFNNPKVQTSLSANTFAITGHVEAKPITEMLPGISGQLDADNLANLRK
ParentalLAEQFPRQVLDSKAPKPDDIDEEDDDVP
LAE.FP.QVLD.KA..P.DIDEE..DVP
RetrocopyLAE*FPQQVLDMKAQNPEDIDEEEGDVP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_570 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 77 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000110251 retrocopy
Canis familiaris ENSCAFG000000037822 retrocopies
Callithrix jacchus ENSCJAG000000215824 retrocopies
Cavia porcellus ENSCPOG000000040061 retrocopy
Ciona savignyi ENSCSAVG000000096531 retrocopy
Dasypus novemcinctus ENSDNOG000000031814 retrocopies
Echinops telfairi ENSETEG0000001192311 retrocopies
Loxodonta africana ENSLAFG000000161243 retrocopies
Macropus eugenii ENSMEUG0000000613510 retrocopies
Myotis lucifugus ENSMLUG000000168841 retrocopy
Macaca mulatta ENSMMUG000000036361 retrocopy
Monodelphis domestica ENSMODG000000007702 retrocopies
Mustela putorius furoENSMPUG000000069662 retrocopies
Mus musculus ENSMUSG000000285682 retrocopies
Oryctolagus cuniculus ENSOCUG000000015173 retrocopies
Otolemur garnettii ENSOGAG000000139181 retrocopy
Otolemur garnettii ENSOGAG00000030256 2 retrocopies
retro_ogar_2759, retro_ogar_570 ,
Ochotona princeps ENSOPRG000000133352 retrocopies
Procavia capensis ENSPCAG000000064283 retrocopies
Pongo abelii ENSPPYG000000013532 retrocopies
Rattus norvegicus ENSRNOG000000085128 retrocopies
Sorex araneus ENSSARG000000031732 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000061296 retrocopies
Tarsius syrichta ENSTSYG000000136353 retrocopies



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