RetrogeneDB ID: | retro_opri_1159 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_8193:32088..33033(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WBP11 | ||
Ensembl ID: | ENSOPRG00000015008 | ||
Aliases: | None | ||
Description: | WW domain binding protein 11 [Source:HGNC Symbol;Acc:16461] |
Percent Identity: | 66.47 % |
Parental protein coverage: | 50.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | IYKELRKLEVEYEQKRAQLSQYFD-AVKNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTS |
IYKEL.KL.VEYEQK.AQLSQYF..AV.N..HVEVE.IPLPDMPHAPSNI.IQD..LPGA.PPSILKKTS | |
Retrocopy | IYKEL*KLQVEYEQKMAQLSQYFA<AVTNSRHVEVENIPLPDMPHAPSNIFIQDSLLPGAKPPSILKKTS |
Parental | AYGPTTRAVSIFPLLGHSVPRLPPGR-KPPGPPPGPPPPQVLQM-YGRKVGFALDLPPRRRDEDMLYSPE |
A.G..T..VSI.PL.....P.L.P.R.KPPGPPPGP.PPQVLQM......GFALDLPP.R.D..MLYSPE | |
Retrocopy | ACGHPTWVVSIMPL---DDPCLSPCR<KPPGPPPGPLPPQVLQM<VSHQMGFALDLPPCR*DKNMLYSPE |
Parental | LAQRGHDDDVSSTSEDDGYPEDMDQEKHDDSSDDSDTDRSDGESEGDEFAHRDDND-RDNNEEKKSGLSV |
L.Q.GHDD.VSS.SE.DG.PED..Q.K.DDS....DTD.SDGES.GDEFAH.D....R.......S.LS. | |
Retrocopy | LVQQGHDDYVSSVSEEDGCPEDIGQDKNDDS----DTDKSDGESRGDEFAHHDNEQ<RQQCXXXXSSLSI |
Parental | RFADMPGKSRKKKKNMKEPTPVQAMMLRMAGQEIPEE-GREVEEFSEDDDDDDSEDSAAEKQSQKQHKED |
.FAD.PG..R.KKKNMKE.TP.QAM...MAGQEIP.E.GREVEE.SEDD..D.S.DSAAEKQ.QKQH.ED | |
Retrocopy | QFADTPGNLR-KKKNMKELTPLQAMICQMAGQEIPKE<GREVEECSEDDGEDNSDDSAAEKQLQKQHEED |
Parental | SHSDGTSASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPA-PPLGP-GPPT |
SHSD...ASSQ..........SQ.QA..MP..PPLGP..A.P.LGP.GPPT | |
Retrocopy | SHSDSMCASSQXXXXXXXXXXSQMQASLMPACPPLGPASA<PALGPSGPPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |