RetrogeneDB ID:

retro_meug_1952

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold74188:3049..4432(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:WBP11
Ensembl ID:ENSMEUG00000013971
Aliases:None
Description:WW domain binding protein 11 [Source:HGNC Symbol;Acc:16461]


Retrocopy-Parental alignment summary:






>retro_meug_1952
TCTTCCTATGGACCTCCCACCAGGGCAATTTCTATACGTCCCCTTCTTGGACCAGGTGTTCCTCATTTGCTTCCTGGAAG
AAAGCCTCCTGACCCATACCCTGGGCCACCTCTCACCCAAGTCCTGTAGATGAATAGCCCTAAAGTGGGCTTTCTTCTAG
AACTTGCCCCTCATTGATGAGTGGGGGATATTTTATACAGTTCAGAATTTGCTCATTGAGGTCATGCTGATGATGCTTCC
AGCACCAGTGAAGATGAAGGTTATCTTGAAGACGTGGATCAAGATTAGCATGAGGACAGCAGTGATGACAGTGACACTGA
CAGGTCAGATGCTCACAGTGGAGGAGTCCATGCATCACACTGATGAAGAGAGAGAGAACAAGGAGGACAAAAAGTCAGGT
CTCAATGTACAATTTGCTGATGTACCTGCAAAATCATGAAAGAAAATGAAAAAACATGAAGGAATTAGCACCTCTTCAAG
CTATGATGCTTAGAACACCAGGTCAGGAAATTTCTGAAGAGGGGCAAGAGGTAGAGGAATTTTCAGAGGATGAGGAAGAG
GAGGATTCTGATGACACTGAGTCAAAGGATACAACACAGCAGCAGTACCAAGAAGAATCTCTTTCTGATGGGGCATCGTC
ATCTCCTGCTTCCCAACAACAGGAACCACCTCCGCAGTCTGCTCCTCCTGCTCAGATATAGGCACCTCCCATGCCAGGAT
CACCCATACTTGGACCACAACCCGCTCCACCATGATGACTACCTGTACCACCCACTGCCCTTCTTCTTCGTCCACATCCA
GGAGCTCCTCCATTCTTAAGATCACCTGGAATGTCAAGGCTTCAAGGGCCTTTACCTCAGCTTTTATCTCCTGGTCCTCC
ACCAAGCAGCCCTCCTTGTCTTTCTTCATGAGGAGGTTCACCACCTGAGGATACCTCCCCCAGCACCTTCAGGGATACCT
CTACTTCATTCTGATATGATGTGCCCACCTTTGGTGCCTCCAATTGGACCTGCTCCACCTGGGCTTTTTCCACCATCTCC
CTTGCCAAATCCAGGGGTTTTAAATGTCCCACCTAATTTGATCCAGAGACCCAAAGTGAATGACACCAGTACAACCACCA
TTGAGAAGAAAGTCACAGCAGCTATCAGCACCAAGACACAAATCACCAATCCCAAGGCGGAAATGACCAGATTTGTGCCC
AATGCACTGAGAGTTCAACAAGAAAACAAAGGAGTTACTGTTTCTCCCTAAAGAAGGTCAGAAAAGGGTTCTACTTTACC
CCTTGCCAAAGCAAGACCTAAATCGAGCCCCTCTGCTCCTGCTTCAGTACAAACCAAGGATGATGTGTATGAAGCCTTCA
TGAATGAGATGGAGGGGCTACTG

ORF - retro_meug_1952 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.87 %
Parental protein coverage: 73.56 %
Number of stop codons detected: 11
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalSAYGPPTRAISILPLLGHGVPRLPPGRKPPGPPPGPPPPQVLQMYGRKVGFALELAPRRREEDILYSPEL
S.YGPPTRAISI.PLLG.GVP.L.PGRKPP.P.PGPP..QVL.M...KVGF.LELAP.....DILYS.E.
RetrocopySSYGPPTRAISIRPLLGPGVPHLLPGRKPPDPYPGPPLTQVL*MNSPKVGFLLELAPH**VGDILYSSEF
ParentalAHRGHDDDASSTSEDEGYPEDIDQDKHDDSSDDSDTDRSDADSEG-EEFMHRDDEERENNEDKKSGLSVR
AH.GH.DDASSTSEDEGY.ED.DQD.H.DSSDDS..D....D....EE.MH..DEEREN.EDKKSGL.V.
RetrocopyAH*GHADDASSTSEDEGYLEDVDQD*HEDSSDDS--DTDRSDAHS>EESMHHTDEERENKEDKKSGLNVQ
ParentalFADVPGKARKKKK-NMKELTPLQAMMLRMAGQEIPEEGREVEEFSEDDEEEDSDDSEPEDTTQQQHKEGS
FADVP.K..KK.K.NMKEL.PLQAMMLR..GQEI.EEG....E..E..E.E...DS...DT.........
RetrocopyFADVPAKS*KKMK>NMKELAPLQAMMLRTPGQEISEEG---QEVEEFSEDEEEEDSD--DTESKDTTQQQ
ParentalLPDGASSSPASQQQQPPPQSVPPTQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPG
......S..AS.......Q..PP..........PP..G.P...P...P.PP..L.P.PP........P..
RetrocopyYQEESLSDGASSSPASQQQEPPPQSAPPAQI*APPMPGSPILGP--QPAPP**L-PVPPTALLLRPHPGA
ParentalMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPP-RLPPPAPPGIPPPRPGMMRPPLVPPL
.P.LR.P....L....P....PGP...PP...P......G.PP.R.PPPAP.GIP.....MM.PPLVPP.
RetrocopyPPFLRSPGMSRLQGPLPQLLSPGP---PPSSPPCLSS*GGSPP>RIPPPAPSGIPLLHSDMMCPPLVPPI
ParentalGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKVDDTSAATIEKKATATISAKPQITNPKAEITRFVPTALRV
GPAPPGLFPP.PLPNPGVL..PPNLIQRPKV.DTS..TIEKK.TA.IS.K.QITNPKAE.TRFVP.ALRV
RetrocopyGPAPPGLFPPSPLPNPGVLNVPPNLIQRPKVNDTSTTTIEKKVTAAISTKTQITNPKAEMTRFVPNALRV
ParentalRRENKGATAAPQRKSEEDSSLPLAKAVPKSGPSAPVSVQTKDDVYEAFMKEMEGLL
..ENKG.T..P.R.SE..S.LPLAKA.PKS.PSAP.SVQTKDDVYEAFM.EMEGLL
RetrocopyQQENKGVTVSP*RRSEKGSTLPLAKARPKSSPSAPASVQTKDDVYEAFMNEMEGLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Macropus eugenii was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_meug_1952 retrocopy.

TSS - click to see more details

Macropus eugenii was not studied using FANTOM5 data.

Lab - click to see more details

retro_meug_1952 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 22 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000147591 retrocopy
retro_btau_20,
Canis familiaris ENSCAFG000000129262 retrocopies
retro_cfam_1369, retro_cfam_1911,
Callithrix jacchus ENSCJAG000000216111 retrocopy
retro_cjac_1737,
Homo sapiens ENSG000000844632 retrocopies
retro_hsap_1878, retro_hsap_4719,
Gorilla gorilla ENSGGOG000000044483 retrocopies
retro_ggor_1375, retro_ggor_1711, retro_ggor_2932,
Macropus eugenii ENSMEUG00000013971 1 retrocopy
retro_meug_1952 ,
Myotis lucifugus ENSMLUG000000152161 retrocopy
retro_mluc_1074,
Macaca mulatta ENSMMUG000000192991 retrocopy
retro_mmul_1329,
Monodelphis domestica ENSMODG000000179491 retrocopy
retro_mdom_143,
Mustela putorius furoENSMPUG000000116191 retrocopy
retro_mputfur_280,
Mus musculus ENSMUSG000000302161 retrocopy
retro_mmus_2740,
Nomascus leucogenys ENSNLEG000000039261 retrocopy
retro_nleu_2651,
Oryctolagus cuniculus ENSOCUG000000171771 retrocopy
retro_ocun_974,
Otolemur garnettii ENSOGAG000000105181 retrocopy
retro_ogar_207,
Ochotona princeps ENSOPRG000000150083 retrocopies
retro_opri_107, retro_opri_1159, retro_opri_678,
Pongo abelii ENSPPYG000000043233 retrocopies
retro_pabe_1558, retro_pabe_2099, retro_pabe_3663,
Pan troglodytes ENSPTRG000000047243 retrocopies
retro_ptro_1260, retro_ptro_1637, retro_ptro_3136,
Rattus norvegicus ENSRNOG000000055053 retrocopies
retro_rnor_1287, retro_rnor_2726, retro_rnor_741,
Rattus norvegicus ENSRNOG000000495931 retrocopy
retro_rnor_740,
Sorex araneus ENSSARG000000070851 retrocopy
retro_sara_753,
Sarcophilus harrisii ENSSHAG000000166491 retrocopy
retro_shar_81,
Tupaia belangeri ENSTBEG000000033941 retrocopy
retro_tbel_2213,


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