RetrogeneDB ID: retro_meug_1952

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold74188:3049..4432(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WBP11
• Ensembl ID: ENSMEUG00000013971
• Aliases: None
• Description: WW domain binding protein 11 [Source:HGNC Symbol;Acc:16461]

Sequence

>retro_meug_1952
TCTTCCTATGGACCTCCCACCAGGGCAATTTCTATACGTCCCCTTCTTGGACCAGGTGTTCCTCATTTGCTTCCTGGAAG
AAAGCCTCCTGACCCATACCCTGGGCCACCTCTCACCCAAGTCCTGTAGATGAATAGCCCTAAAGTGGGCTTTCTTCTAG
AACTTGCCCCTCATTGATGAGTGGGGGATATTTTATACAGTTCAGAATTTGCTCATTGAGGTCATGCTGATGATGCTTCC
AGCACCAGTGAAGATGAAGGTTATCTTGAAGACGTGGATCAAGATTAGCATGAGGACAGCAGTGATGACAGTGACACTGA
CAGGTCAGATGCTCACAGTGGAGGAGTCCATGCATCACACTGATGAAGAGAGAGAGAACAAGGAGGACAAAAAGTCAGGT
CTCAATGTACAATTTGCTGATGTACCTGCAAAATCATGAAAGAAAATGAAAAAACATGAAGGAATTAGCACCTCTTCAAG
CTATGATGCTTAGAACACCAGGTCAGGAAATTTCTGAAGAGGGGCAAGAGGTAGAGGAATTTTCAGAGGATGAGGAAGAG
GAGGATTCTGATGACACTGAGTCAAAGGATACAACACAGCAGCAGTACCAAGAAGAATCTCTTTCTGATGGGGCATCGTC
ATCTCCTGCTTCCCAACAACAGGAACCACCTCCGCAGTCTGCTCCTCCTGCTCAGATATAGGCACCTCCCATGCCAGGAT
CACCCATACTTGGACCACAACCCGCTCCACCATGATGACTACCTGTACCACCCACTGCCCTTCTTCTTCGTCCACATCCA
GGAGCTCCTCCATTCTTAAGATCACCTGGAATGTCAAGGCTTCAAGGGCCTTTACCTCAGCTTTTATCTCCTGGTCCTCC
ACCAAGCAGCCCTCCTTGTCTTTCTTCATGAGGAGGTTCACCACCTGAGGATACCTCCCCCAGCACCTTCAGGGATACCT
CTACTTCATTCTGATATGATGTGCCCACCTTTGGTGCCTCCAATTGGACCTGCTCCACCTGGGCTTTTTCCACCATCTCC
CTTGCCAAATCCAGGGGTTTTAAATGTCCCACCTAATTTGATCCAGAGACCCAAAGTGAATGACACCAGTACAACCACCA
TTGAGAAGAAAGTCACAGCAGCTATCAGCACCAAGACACAAATCACCAATCCCAAGGCGGAAATGACCAGATTTGTGCCC
AATGCACTGAGAGTTCAACAAGAAAACAAAGGAGTTACTGTTTCTCCCTAAAGAAGGTCAGAAAAGGGTTCTACTTTACC
CCTTGCCAAAGCAAGACCTAAATCGAGCCCCTCTGCTCCTGCTTCAGTACAAACCAAGGATGATGTGTATGAAGCCTTCA
TGAATGAGATGGAGGGGCTACTG

Alignment

ORF - retro_meug_1952 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.87 %
• Parental protein coverage: 73.56 %
• Number of stop codons detected: 11
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  SAYGPPTRAISILPLLGHGVPRLPPGRKPPGPPPGPPPPQVLQMYGRKVGFALELAPRRREEDILYSPEL
          S.YGPPTRAISI.PLLG.GVP.L.PGRKPP.P.PGPP..QVL.M...KVGF.LELAP.....DILYS.E.
Retrocopy SSYGPPTRAISIRPLLGPGVPHLLPGRKPPDPYPGPPLTQVL*MNSPKVGFLLELAPH**VGDILYSSEF

Parental  AHRGHDDDASSTSEDEGYPEDIDQDKHDDSSDDSDTDRSDADSEG-EEFMHRDDEERENNEDKKSGLSVR
          AH.GH.DDASSTSEDEGY.ED.DQD.H.DSSDDS..D....D....EE.MH..DEEREN.EDKKSGL.V.
Retrocopy AH*GHADDASSTSEDEGYLEDVDQD*HEDSSDDS--DTDRSDAHS>EESMHHTDEERENKEDKKSGLNVQ

Parental  FADVPGKARKKKK-NMKELTPLQAMMLRMAGQEIPEEGREVEEFSEDDEEEDSDDSEPEDTTQQQHKEGS
          FADVP.K..KK.K.NMKEL.PLQAMMLR..GQEI.EEG....E..E..E.E...DS...DT.........
Retrocopy FADVPAKS*KKMK>NMKELAPLQAMMLRTPGQEISEEG---QEVEEFSEDEEEEDSD--DTESKDTTQQQ

Parental  LPDGASSSPASQQQQPPPQSVPPTQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPG
          ......S..AS.......Q..PP..........PP..G.P...P...P.PP..L.P.PP........P..
Retrocopy YQEESLSDGASSSPASQQQEPPPQSAPPAQI*APPMPGSPILGP--QPAPP**L-PVPPTALLLRPHPGA

Parental  MPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPP-RLPPPAPPGIPPPRPGMMRPPLVPPL
          .P.LR.P....L....P....PGP...PP...P......G.PP.R.PPPAP.GIP.....MM.PPLVPP.
Retrocopy PPFLRSPGMSRLQGPLPQLLSPGP---PPSSPPCLSS*GGSPP>RIPPPAPSGIPLLHSDMMCPPLVPPI

Parental  GPAPPGLFPPAPLPNPGVLSAPPNLIQRPKVDDTSAATIEKKATATISAKPQITNPKAEITRFVPTALRV
          GPAPPGLFPP.PLPNPGVL..PPNLIQRPKV.DTS..TIEKK.TA.IS.K.QITNPKAE.TRFVP.ALRV
Retrocopy GPAPPGLFPPSPLPNPGVLNVPPNLIQRPKVNDTSTTTIEKKVTAAISTKTQITNPKAEMTRFVPNALRV

Parental  RRENKGATAAPQRKSEEDSSLPLAKAVPKSGPSAPVSVQTKDDVYEAFMKEMEGLL
          ..ENKG.T..P.R.SE..S.LPLAKA.PKS.PSAP.SVQTKDDVYEAFM.EMEGLL
Retrocopy QQENKGVTVSP*RRSEKGSTLPLAKARPKSSPSAPASVQTKDDVYEAFMNEMEGLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1952 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1952 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 22 parental genes, and 34 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014759	1 retrocopy	retro_btau_20,
Canis familiaris	ENSCAFG00000012926	2 retrocopies	retro_cfam_1369, retro_cfam_1911,
Callithrix jacchus	ENSCJAG00000021611	1 retrocopy	retro_cjac_1737,
Homo sapiens	ENSG00000084463	2 retrocopies	retro_hsap_1878, retro_hsap_4719,
Gorilla gorilla	ENSGGOG00000004448	3 retrocopies	retro_ggor_1375, retro_ggor_1711, retro_ggor_2932,
Macropus eugenii	ENSMEUG00000013971	1 retrocopy	retro_meug_1952 ,
Myotis lucifugus	ENSMLUG00000015216	1 retrocopy	retro_mluc_1074,
Macaca mulatta	ENSMMUG00000019299	1 retrocopy	retro_mmul_1329,
Monodelphis domestica	ENSMODG00000017949	1 retrocopy	retro_mdom_143,
Mustela putorius furo	ENSMPUG00000011619	1 retrocopy	retro_mputfur_280,
Mus musculus	ENSMUSG00000030216	1 retrocopy	retro_mmus_2740,
Nomascus leucogenys	ENSNLEG00000003926	1 retrocopy	retro_nleu_2651,
Oryctolagus cuniculus	ENSOCUG00000017177	1 retrocopy	retro_ocun_974,
Otolemur garnettii	ENSOGAG00000010518	1 retrocopy	retro_ogar_207,
Ochotona princeps	ENSOPRG00000015008	3 retrocopies	retro_opri_107, retro_opri_1159, retro_opri_678,
Pongo abelii	ENSPPYG00000004323	3 retrocopies	retro_pabe_1558, retro_pabe_2099, retro_pabe_3663,
Pan troglodytes	ENSPTRG00000004724	3 retrocopies	retro_ptro_1260, retro_ptro_1637, retro_ptro_3136,
Rattus norvegicus	ENSRNOG00000005505	3 retrocopies	retro_rnor_1287, retro_rnor_2726, retro_rnor_741,
Rattus norvegicus	ENSRNOG00000049593	1 retrocopy	retro_rnor_740,
Sorex araneus	ENSSARG00000007085	1 retrocopy	retro_sara_753,
Sarcophilus harrisii	ENSSHAG00000016649	1 retrocopy	retro_shar_81,
Tupaia belangeri	ENSTBEG00000003394	1 retrocopy	retro_tbel_2213,