RetrogeneDB ID:

retro_btau_20

Retrocopy
location
Organism:Cow (Bos taurus)
Coordinates:13:74496557..74498471(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSBTAG00000037942
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:BT.18030
Ensembl ID:ENSBTAG00000014759
Aliases:None
Description:WW domain-binding protein 11 [Source:RefSeq peptide;Acc:NP_001193334]


Retrocopy-Parental alignment summary:






>retro_btau_20
ATGGGGCGGAGATCCACGTCATCCACCAAAAGTGGAAAATTTATGAACCCTACAGACCAAGCCAGAAAAGAAGCTCGGAA
AAGAGAATTAAAGAACAAAAAACAGCACATGATGGTACGAGCTGCAGTTTTAAAGATGAAGGATCCCAAACAAATTATCC
GGGACATGGAAAAATTGGATGAAATGGAGTTTAACCCAGTGCAGCAGCCACAGTTAAATAAGAAAGTGCTGAAAGACAAG
CGTAAAAAGCTACGTGAAACATATGAACGTATTCTACAACTCTATGAGAAAGAGAATCCAGATATTTACAAAGAATTGAG
AAAGTCAGAGGTAGAATATGAACAGAAGAGGGCTCAACTTAGCCAGTATTTTGATGCTGTCAAGAATGCCCAGCATGTGG
AAGTGGAGAGTATTCCTCTGCCAGATATGCCGCATGCTCCTTCCAGCATCTTGATCCAGGACATTCCACTTTCTGGGGCC
CAGCCACCCTCCATCCTTAAGAAGAACTCAGCCTATGGACCTCCAACTCGGGCAGTTTCTATACTTCCTCTTCTTGGACA
TGACGTTCCACGTTTGCCCCCTGGCAGGAAACCTCCAGGTCCTCCCCCGGGCCCACCTCCTCCTCAAGTCTTACAAATGT
ATGGCCACAAAGTGGGCTTTGCCCTAGATCTTCCGACTCGTAGGCGAGATGAAGACATGTTATATAGTCCTGAACTTGCT
CAGCGGGGTCATGACGATGATGTTTCCTGCACCAGTGAAGATGATGGCTATCCTGAAGACATGGACCAGGATAAGCATGA
TGACAGTACTGATGACAGCGACAGTGACAGATCAGGTGGAGAAAGTGAAGGGGATGAATTTGTGCACCGTGATGACACTG
AGAGAGAAAACAATGAAGAAAAAAAGTCAGGTCTGAGTGTACGGTTTGCAGATATGCCTGGAAAATCTAGGAAGAAGAAG
AACATGAAGGAGCTGACTCCTCTCCAAGCCATGATGCTTCAAATGGCAGGTCAGGAAATCCCTGAGGAGGGACGAGAAGT
CGAGGAATTTTCAGAGGAAGATGATGAAGATTCAGATGAGTCTGAAGCAGAAAAGCAATCACAGAAACAGCATAAGGAGG
AATCTCTCTCTGATGGCACGTCTGCAGCTTCCCAGCAGCAAGCCCCTCCACAGTCTGTTCCTCCATCTCAGATACAGGCA
CCCCCCATGCCAGGACCACCTCCGCTTGGACCGCCACCTGCTCCACCTTTACGGCCACCTGGACCACCGACAGGCCTTCC
TCCTGGACCACCTCCAGGAGCTCCTCCGTTCCTGAGACCGCCTGGAATGCCAGGACTCCAAGGGCCTCTGCCCCACCTTT
TACCTCCAGGCCCACCACCCGGTCGAACCCCTGGCCCTCCTCCTGGCCCACCCCCAGGTCTGCCTCCTGGCCCTCCTCCT
CGGGGACCCCCACCACAGCTACCTCCCCCGGCACCTCCAGGTATCCCTCCACCCCGTCCTGGCATGATGCGCCCACCTCT
GGTGCCTCCTCTTGGACCTGCCCCACCAGGGCTCTTTCCACCAGCTCCCTTACCCAACCCTGGGGTTCTAAGTGCTCCCC
CCAACTTGATCCAGAGACCCAAGGCGGATGACACAAGCACAGCCACCATCGAGAAGAAAGCCACGGCAACCATCAGTGCC
AAGCCACAGATCACTAATCCCAAGGCAGAGATCACACGATTTGTGCCGACCACACCGCGGGTGCGTCGGGAGAATAAAGG
GGCTGCTGCTGCTGCGCAGAGAAAGTCGGAGGATGATTCTGCTGTGCCTCTTGCCAAAACAGCACCCAAATCTGGCCCAT
CTCTTCCCGTGTCGGTGCAGACTAAGGACGATGTCTGTGAGGCTTTCATGAAAGAGATGGAAGGGCTGCTGTGA

ORF - retro_btau_20 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.06 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMGRRSTSSTKSGKFMNPTDQASKCPLILEKMLMKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPV
MGRR...ST.S.K................K...KNKKQ.MMVRAAVLKMKDPKQIIRDMEKLDEMEFNPV
RetrocopyMGRR---STSSTKSGKFMNPTDQARKEARKRELKNKKQHMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPV
ParentalQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVES
QQPQLN.KVLKDKRKKLRET.ERIL.LYEKENPDIYKELRK.EVEYEQKRAQLSQYFDAVKNAQHVEVES
RetrocopyQQPQLNKKVLKDKRKKLRETYERILQLYEKENPDIYKELRKSEVEYEQKRAQLSQYFDAVKNAQHVEVES
ParentalIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGPPP
IPLPDMPHAPS.ILIQDIPL.GAQPPSILKK.SAYGPPTRAVSILPLLGH.VPRLPPGRKPPGPPPGPPP
RetrocopyIPLPDMPHAPSSILIQDIPLSGAQPPSILKKNSAYGPPTRAVSILPLLGHDVPRLPPGRKPPGPPPGPPP
ParentalPQVLQMYGRKVGFALYLPTRRRDEDMLYSPELAQRGHDDDVSSTSEDDGYPEDMDQDKHDDSTDDSDSDR
PQVLQMYG.KVGFAL.LPTRRRDEDMLYSPELAQRGHDDDVS.TSEDDGYPEDMDQDKHDDSTDDSDSDR
RetrocopyPQVLQMYGHKVGFALDLPTRRRDEDMLYSPELAQRGHDDDVSCTSEDDGYPEDMDQDKHDDSTDDSDSDR
ParentalSDGESEGDEFVHRDDTERENNEEKKSGLSVRFADMPGKSRKKKKKNMKELTPLQAMMLRMAGQEIPEEGR
S.GESEGDEFVHRDDTERENNEEKKSGLSVRFADMPGKSRKKK..NMKELTPLQAMML.MAGQEIPEEGR
RetrocopySGGESEGDEFVHRDDTERENNEEKKSGLSVRFADMPGKSRKKK--NMKELTPLQAMMLQMAGQEIPEEGR
ParentalEVEEFSEEDDEDSDDSEAEKQSQKQHKEESLSDGTSAASQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAP
EVEEFSEEDDEDSD.SEAEKQSQKQHKEESLSDGTSAASQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAP
RetrocopyEVEEFSEEDDEDSDESEAEKQSQKQHKEESLSDGTSAASQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAP
ParentalPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPP
PLRPPGPPTGLPPGPPPGAPPFLRPPGMPGL.GPLP.LLPPGPPPGR.PGPPPGPPPGLPPGPPPRGPPP
RetrocopyPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLQGPLPHLLPPGPPPGRTPGPPPGPPPGLPPGPPPRGPPP
ParentalRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTSAATIEKKAT
.LPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTS.ATIEKKAT
RetrocopyQLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTSTATIEKKAT
ParentalATISAKPQITNPKAEITRFVPTALRVRRENKGAAAAPQRKSEDDSAVPLAKTAPKSGPSVPVSVQTKDDV
ATISAKPQITNPKAEITRFVPT..RVRRENKGAAAA.QRKSEDDSAVPLAKTAPKSGPS.PVSVQTKDDV
RetrocopyATISAKPQITNPKAEITRFVPTTPRVRRENKGAAAAAQRKSEDDSAVPLAKTAPKSGPSLPVSVQTKDDV
ParentalYEAFMKEMEGLL
.EAFMKEMEGLL
RetrocopyCEAFMKEMEGLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
ERP005899_liver 0 .29 RPM 50 .25 RPM
ERP005899_muscle 0 .48 RPM 66 .25 RPM
SRP017611_brain 1 .74 RPM 65 .69 RPM
SRP017611_kidney 2 .07 RPM 77 .23 RPM
SRP017611_liver 0 .68 RPM 39 .42 RPM
SRP030211_testis 16 .45 RPM 464 .61 RPM

ChIP-Seq - click to see more details

Bos taurus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_btau_20 retrocopy.

TSS - click to see more details

Bos taurus was not studied using FANTOM5 data.

Lab - click to see more details

retro_btau_20 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_btau_20 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 22 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG00000014759 1 retrocopy
retro_btau_20 ,
Canis familiaris ENSCAFG000000129262 retrocopies
retro_cfam_1369, retro_cfam_1911,
Callithrix jacchus ENSCJAG000000216111 retrocopy
retro_cjac_1737,
Homo sapiens ENSG000000844632 retrocopies
retro_hsap_1878, retro_hsap_4719,
Gorilla gorilla ENSGGOG000000044483 retrocopies
retro_ggor_1375, retro_ggor_1711, retro_ggor_2932,
Macropus eugenii ENSMEUG000000139711 retrocopy
retro_meug_1952,
Myotis lucifugus ENSMLUG000000152161 retrocopy
retro_mluc_1074,
Macaca mulatta ENSMMUG000000192991 retrocopy
retro_mmul_1329,
Monodelphis domestica ENSMODG000000179491 retrocopy
retro_mdom_143,
Mustela putorius furoENSMPUG000000116191 retrocopy
retro_mputfur_280,
Mus musculus ENSMUSG000000302161 retrocopy
retro_mmus_2740,
Nomascus leucogenys ENSNLEG000000039261 retrocopy
retro_nleu_2651,
Oryctolagus cuniculus ENSOCUG000000171771 retrocopy
retro_ocun_974,
Otolemur garnettii ENSOGAG000000105181 retrocopy
retro_ogar_207,
Ochotona princeps ENSOPRG000000150083 retrocopies
retro_opri_107, retro_opri_1159, retro_opri_678,
Pongo abelii ENSPPYG000000043233 retrocopies
retro_pabe_1558, retro_pabe_2099, retro_pabe_3663,
Pan troglodytes ENSPTRG000000047243 retrocopies
retro_ptro_1260, retro_ptro_1637, retro_ptro_3136,
Rattus norvegicus ENSRNOG000000055053 retrocopies
retro_rnor_1287, retro_rnor_2726, retro_rnor_741,
Rattus norvegicus ENSRNOG000000495931 retrocopy
retro_rnor_740,
Sorex araneus ENSSARG000000070851 retrocopy
retro_sara_753,
Sarcophilus harrisii ENSSHAG000000166491 retrocopy
retro_shar_81,
Tupaia belangeri ENSTBEG000000033941 retrocopy
retro_tbel_2213,


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